Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0148
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
           protein F54C4.3 protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 357 HRNGTSI-RLIIIALSLPPLTTPRTVIMQEPV 265
           HR GT + R++    ++   TTPR+VI+ EP+
Sbjct: 422 HRFGTPLLRMLFEGFTMDHYTTPRSVILMEPL 453


>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
            T08G11.1b protein.
          Length = 3185

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 429  YKPGRNVDLHNDLSLESIRKHLSQHRNGTSIRLIIIALSLP 307
            Y+  R    +NDL +  I  HLS  + GTS  +    +S+P
Sbjct: 2770 YRSQRPKSFYNDLHISPIMMHLSFSQGGTSGDVAASGVSMP 2810


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
            T08G11.1a protein.
          Length = 3212

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 429  YKPGRNVDLHNDLSLESIRKHLSQHRNGTSIRLIIIALSLP 307
            Y+  R    +NDL +  I  HLS  + GTS  +    +S+P
Sbjct: 2797 YRSQRPKSFYNDLHISPIMMHLSFSQGGTSGDVAASGVSMP 2837


>Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical protein
            F18E2.3 protein.
          Length = 1096

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -1

Query: 364  KSASERYFYKAHNNRLIVAAADYSPNRDHAGASHR*RXDTSLWIHP-ITLALDALRSNTR 188
            K A  RY  K + NR+  +   + P R + G+      D ++ +   +T+  +A   +T 
Sbjct: 1018 KMAVVRYLNKIYTNRVGTSTVVWEPYRLYLGSLSDRNDDDNMSVRSGMTVTSNATMRSTA 1077

Query: 187  SKDPGNRTRRTRQRV 143
            S   G    R R R+
Sbjct: 1078 SSTRGRGRGRGRSRI 1092


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,830
Number of Sequences: 27780
Number of extensions: 258037
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)