Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0148
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31640.1 68417.m04494 transcriptional factor B3 family protei...    28   6.3  
At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplas...    27   8.4  

>At4g31640.1 68417.m04494 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 [Brassica
           oleracea var. botrytis] GI:3170424; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 352

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 202 RSNTRSK--DPGNRTRRTRQRVQPNLKISPLSFSPDLLNGSRF*SGSRFIRD 53
           RS+ R++  D    + R  + ++ N+K  P  FSPDL   S+  + S   RD
Sbjct: 113 RSHDRNEESDEIGESSRNEKIIEENVKTEPDQFSPDLTCFSQSVTASNLTRD 164


>At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplasmic
           reticulum-type (ECA1) identical to SP|P92939
           Calcium-transporting ATPase 1, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 1061

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 520 KCFTYLPVYIANGYCHLLLSNIAENVKVGRI 612
           KC  +    + NG C  L+++   N ++GR+
Sbjct: 228 KCMVFAGTTVVNGNCICLVTDTGMNTEIGRV 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,095,348
Number of Sequences: 28952
Number of extensions: 243164
Number of successful extensions: 550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)