Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0147
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.2  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   4.2  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   5.5  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   9.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 632 SWIVQFEGPQEITRVLELFSNSE 564
           SW+  F+G   ITR +  +  S+
Sbjct: 915 SWVAPFDGNSPITRYMIEYKQSK 937


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 470 LSLANPRLYTNSRTLF 423
           LS A PRL  N+RT+F
Sbjct: 87  LSSAFPRLKRNARTIF 102


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 218 WQLLRSRGSQIGIVIRIRGINQVSPKSVKLXNCLD 322
           W LL + G  I  V R     ++SP  + +  CLD
Sbjct: 37  WILLFTLGVTISGVYRTDFYKKLSPMRLIVQTCLD 71


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 268 PWYQPSFTEVRKVXQLFRLRQXNNG 342
           P  QP+    R   +  R++Q NNG
Sbjct: 80  PQQQPASVARRNARERNRVKQVNNG 104


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 282 WLIPRIRMTMPIWLPR 235
           WL+ +  +T+ IW P+
Sbjct: 470 WLLSQTWITLHIWTPK 485


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 282 WLIPRIRMTMPIWLPR 235
           WL+ +  +T+ IW P+
Sbjct: 470 WLLSQTWITLHIWTPK 485


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 282 WLIPRIRMTMPIWLPR 235
           WL+ +  +T+ IW P+
Sbjct: 470 WLLSQTWITLHIWTPK 485


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 282 WLIPRIRMTMPIWLPR 235
           WL+ +  +T+ IW P+
Sbjct: 470 WLLSQTWITLHIWTPK 485


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,728
Number of Sequences: 336
Number of extensions: 3916
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)