Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0147
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    97   2e-21
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    97   2e-21
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    96   4e-21
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    29   0.64 
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.64 
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    28   1.5  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    27   1.9  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    27   3.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.5  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 42/72 (58%), Positives = 57/72 (79%)
 Frame = +1

Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
           + RK+ QL RL Q NNGVFV+ NKAT  ML++ EPY+ +G PNLK+VREL+YKRGF K++
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVN 165

Query: 472 GQRIPITSNSIV 507
            QRI ++ N+I+
Sbjct: 166 KQRIALSDNAII 177



 Score = 85.8 bits (203), Expect = 5e-18
 Identities = 34/61 (55%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
 Frame = +3

Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNRE 692
           L K++I+ +EDLIHEI+TVG  FK A+NF+WPF+L++P GGWR +K  H+++GGD G R+
Sbjct: 181 LGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRD 240

Query: 693 D 695
           +
Sbjct: 241 E 241



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 32/75 (42%), Positives = 43/75 (57%)
 Frame = +3

Query: 27  PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 206
           PES+LK            +    +++++  KK+  I KRAE Y  EYR  ER++I L R+
Sbjct: 17  PESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRK 76

Query: 207 ARNRGNYYVPGEAKL 251
           AR  GNYYVP E KL
Sbjct: 77  ARAEGNYYVPDETKL 91



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 242 SQIGIVIRIRGINQVSPKSVKLXNCL 319
           +++  VIRIRGIN + PK+ K+   L
Sbjct: 89  TKLVFVIRIRGINNIPPKARKIMQLL 114


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 42/72 (58%), Positives = 56/72 (77%)
 Frame = +1

Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
           ++RKV +L RL + NN VFVR NKA   MLRI EPY+ +G PNL SVREL+YKRGF K++
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKIN 163

Query: 472 GQRIPITSNSIV 507
           GQRI ++ N+++
Sbjct: 164 GQRIALSDNALI 175



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 27/75 (36%), Positives = 44/75 (58%)
 Frame = +3

Query: 27  PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 206
           PE +LK            ++  + ++ +  K ++E FKRAE ++  YR +ER+ IRL R 
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74

Query: 207 ARNRGNYYVPGEAKL 251
           A+N+G+ +VP E KL
Sbjct: 75  AKNKGDIFVPDETKL 89



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG-WRKKTIHYVDGGDFG 683
           L K+++I +ED+IHEI+ VG  FK  + FLWPF L         KK  H+ +G   G
Sbjct: 179 LGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAG 235


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 40/72 (55%), Positives = 56/72 (77%)
 Frame = +1

Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
           + RK+ QL RL Q NNG+FV+ NKA   ML++ EPY+ +G PN K+VREL+YKRGF K++
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVN 164

Query: 472 GQRIPITSNSIV 507
            QRIP++ N+I+
Sbjct: 165 KQRIPLSDNAII 176



 Score = 88.6 bits (210), Expect = 7e-19
 Identities = 37/61 (60%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
 Frame = +3

Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNRE 692
           L K++I+ VEDLIHEI+TVG  FK A+NFLWPFKL++P GGWR +K  H+++GGD G R+
Sbjct: 180 LGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRD 239

Query: 693 D 695
           +
Sbjct: 240 E 240



 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 33/75 (44%), Positives = 44/75 (58%)
 Frame = +3

Query: 27  PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 206
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 207 ARNRGNYYVPGEAKL 251
           AR  GNY+VP E KL
Sbjct: 76  ARAEGNYFVPHEPKL 90



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 257 VIRIRGINQVSPKSVKLXNCL 319
           V+RIRGIN + PK+ K+   L
Sbjct: 93  VVRIRGINNIPPKARKIMQLL 113


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 646 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 512
           LR P   L  L+GH   +  L +SP  +     SST   +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 108 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 224
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 659 MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 564
           MNGL  P   W +   GP  + R++  F   E
Sbjct: 75  MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 432 P*VSIQTWIRQAEWTTYTNHFQQHCWKRLHKHNII 536
           P ++I   ++Q  W TY N +Q    KR  KH  +
Sbjct: 49  PTMNIFGQMQQVRWKTYGNEYQPSNRKRKRKHGFL 83


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -1

Query: 626 IVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLPTML---LEVIGIRCPLSLAN 456
           ++ F     I   L LFS  +D+M+  LN  +  +   L   L    +++G R PLSL +
Sbjct: 75  LLNFTQKNPILASLFLFSTDKDIMNSSLNPASQAYTFDLGRTLPISEDILGYRKPLSLTD 134


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 141 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 242
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 572 NSEDLMDEVLNTDNVVFMEPLPTMLLEVIGIRCPLSLANPRLYTNSRTL 426
           +SE+  + V+N+   V    L     +  G  CP+S A P L    R+L
Sbjct: 218 SSEEEEENVINSSKSVPSFDLHDPFSQTFGKECPISTAPPVLNIGDRSL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,687
Number of Sequences: 5004
Number of extensions: 62664
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)