Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0147
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 111 7e-25
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 110 1e-24
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 69 3e-12
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 30 1.5
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 2.0
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 30 2.0
02_04_0385 + 22514619-22514703,22514756-22514848,22515003-225152... 29 3.5
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 29 4.7
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 29 4.7
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 28 6.2
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 8.1
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 111 bits (266), Expect = 7e-25
Identities = 47/72 (65%), Positives = 62/72 (86%)
Frame = +1
Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
+ RK+ QL RLRQ NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 159
Query: 472 GQRIPITSNSIV 507
QRIP+T+N ++
Sbjct: 160 KQRIPLTNNKVI 171
Score = 96.7 bits (230), Expect = 2e-20
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = +3
Query: 507 WKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGN 686
++ L KH+IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GN
Sbjct: 178 YQGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGN 237
Query: 687 RED 695
RE+
Sbjct: 238 REN 240
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = +3
Query: 24 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 203
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 204 QARNRGNYYVPGEAKL 251
+AR +G +YV E KL
Sbjct: 70 EARMKGGFYVSPEEKL 85
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 110 bits (264), Expect = 1e-24
Identities = 47/75 (62%), Positives = 62/75 (82%)
Frame = +1
Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
+ RK+ QL RLRQ NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 160
Query: 472 GQRIPITSNSIVGRG 516
QRIP+ +N ++ G
Sbjct: 161 KQRIPLQNNKVIEEG 175
Score = 98.3 bits (234), Expect = 5e-21
Identities = 42/60 (70%), Positives = 48/60 (80%)
Frame = +3
Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRED 695
L KH+IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GNRED
Sbjct: 176 LGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRED 235
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/80 (37%), Positives = 46/80 (57%)
Frame = +3
Query: 12 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 191
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 192 RLARQARNRGNYYVPGEAKL 251
+L R+AR +G +YV EAKL
Sbjct: 67 QLKREARMKGGFYVSPEAKL 86
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 69.3 bits (162), Expect = 3e-12
Identities = 28/71 (39%), Positives = 48/71 (67%)
Frame = +1
Query: 295 VRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSG 474
+R++ + RL Q GVF++ AT+ L + EP+I +G+PNLK+V++L+YK+G L
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDK 163
Query: 475 QRIPITSNSIV 507
+ P+TSN ++
Sbjct: 164 EPFPLTSNDLI 174
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +3
Query: 510 KRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGD 677
K L ++ IIC+EDL+HEI +VG F+ ASNFL PFKL P + K + DG +
Sbjct: 176 KALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGAE 231
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 646 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFQQC 500
LR P + GH+K ++Y+ F T +++ +ST L LW + + C
Sbjct: 545 LRNPSAPVHVFGGHKKAVSYVKFLSTNELA--SASTDSTLRLWDVKENC 591
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 90 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 230
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/71 (23%), Positives = 36/71 (50%)
Frame = -1
Query: 695 VFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFME 516
V A +++ + + L+ + W+ G ++LEL N+E + D+VL + + M
Sbjct: 1113 VSASSRILDGECTSSALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVMP 1172
Query: 515 PLPTMLLEVIG 483
+ ++L +IG
Sbjct: 1173 KIYSLLSNLIG 1183
>02_04_0385 +
22514619-22514703,22514756-22514848,22515003-22515256,
22515378-22515590,22515676-22515768,22516213-22516317,
22516402-22516710,22517648-22517717,22518008-22518102,
22519143-22519361
Length = 511
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 96 KRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEA-KLALSSESV 272
KR ++ ++ + Q ++ RIK+R+E++ ++ +Y V ++ K+ L SE+
Sbjct: 343 KRTNAELRAQVADLSNKVQESEQARIKDREEMKRSQSEMEAKDYVVVCDSDKITLDSENK 402
Query: 273 -VSTKFHR 293
+ TK HR
Sbjct: 403 NIITKIHR 410
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 198 ARQARNRGNYYVPGEAKLALSSESVVSTKFHRSP*SYXT 314
A+ G Y++ E L + S+ T++H+SP S+ T
Sbjct: 814 AQSIVEEGGYFILSEGPLVQEAHSLPKTQWHKSPISHST 852
>05_06_0020 + 24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 202 DKHAIVATTTFPGKPNWHCHPNPWYQPSFTEVR 300
DKH +T+ N H +P PW +F + R
Sbjct: 1039 DKHLWRDDSTYQQTTNGHAYPQPWKDVNFLQAR 1071
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 235 PGKPNWHCHPNPWYQPSFTEVRKVXQLFRLRQ 330
P KPNWH N P+ T V Q+F+ RQ
Sbjct: 1304 PRKPNWH-EGNTKSSPNSTAVEFTGQVFQRRQ 1334
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 396 LHCLGIPQLKECP*VSIQTWIRQAEW 473
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,405,366
Number of Sequences: 37544
Number of extensions: 408210
Number of successful extensions: 1056
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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