Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0147
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      117   1e-26
SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)                     30   2.1  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   29   4.8  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   8.3  
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  117 bits (281), Expect = 1e-26
 Identities = 53/72 (73%), Positives = 62/72 (86%)
 Frame = +1

Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
           +VRK+ QL RLRQ NNGVFVRLNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+ 
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVD 160

Query: 472 GQRIPITSNSIV 507
            QR+ +T NSIV
Sbjct: 161 KQRVALTDNSIV 172



 Score =  111 bits (267), Expect = 5e-25
 Identities = 49/62 (79%), Positives = 54/62 (87%)
 Frame = +3

Query: 510 KRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 689
           K L KH IICVEDLIHEIFTVGE FK ASNFLWPFKL++P GG+RKKT H+V+GGD GNR
Sbjct: 174 KVLGKHGIICVEDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEGGDHGNR 233

Query: 690 ED 695
           ED
Sbjct: 234 ED 235



 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 38/83 (45%), Positives = 53/83 (63%)
 Frame = +3

Query: 6   REKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 185
           R K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR KE D
Sbjct: 5   RVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKEVD 64

Query: 186 EIRLARQARNRGNYYVPGEAKLA 254
           E+R+ + A+  GN+YVP EA+LA
Sbjct: 65  ELRMKKMAKKHGNFYVPPEARLA 87



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 242 SQIGIVIRIRGINQVSPKSVKLXNCL 319
           +++  VIRIRGIN VSPK  K+   L
Sbjct: 84  ARLAFVIRIRGINGVSPKVRKILQLL 109


>SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)
          Length = 147

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 471 WTTYTNHFQQHCWKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLN 623
           W + T HF Q  WK   +  +   E     +F VG ++K A N L  F  N
Sbjct: 93  WQSGTGHFTQVVWKGTKEVAMASAEGADGSVFVVG-RYKPAGNVLSQFAEN 142


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 531 IICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 653
           + C+   + E+ TV E F+   NFL  FK+  P     KKT
Sbjct: 344 LTCLCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 102 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 227
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 102 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 227
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 174 KERDEIRLARQARNRGNYYVP 236
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 552 IHEIFTVGEKFKYASNFLWPFKLNN 626
           ++ + T   KF YA++ LW F  NN
Sbjct: 58  LNRVITTTGKFSYATDDLWQFSCNN 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,368,920
Number of Sequences: 59808
Number of extensions: 474723
Number of successful extensions: 1219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)