Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0147
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   109   2e-24
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   3.2  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      27   9.7  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    27   9.7  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  109 bits (262), Expect = 2e-24
 Identities = 46/70 (65%), Positives = 59/70 (84%)
 Frame = +1

Query: 298 RKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQ 477
           RK  Q+ RLRQ NNGVFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK+ G 
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161

Query: 478 RIPITSNSIV 507
           R+PIT N+IV
Sbjct: 162 RVPITDNTIV 171



 Score =  109 bits (262), Expect = 2e-24
 Identities = 47/60 (78%), Positives = 51/60 (85%)
 Frame = +3

Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRED 695
           L K NIIC+EDL HEI TVG  FK A+NFLWPFKLNNPTGGW KKT H+V+GGDFGNRED
Sbjct: 175 LGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNRED 234



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 32/82 (39%), Positives = 50/82 (60%)
 Frame = +3

Query: 9   EKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDE 188
           +K+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR  +++ 
Sbjct: 5   KKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEG 64

Query: 189 IRLARQARNRGNYYVPGEAKLA 254
           +RL R+A  +G++YVP E K+A
Sbjct: 65  LRLKREAEAKGDFYVPAEHKVA 86



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 245 QIGIVIRIRGINQVSPKSVKLXNCL 319
           ++  V+RIRGINQ+ PK  K    L
Sbjct: 84  KVAFVVRIRGINQLHPKPRKALQIL 108


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 414 VSPSNVRLGDT*HIHSSLIQTYKHTIVXLAQSKQLXNFTDFGE 286
           ++PS  RL    H H+ L Q +++ I    Q K++  F   GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 268  PWYQPSFTEVRKVXQLFRLRQXNNGVFVRLN 360
            PW  P FT +  V  LF+L + ++ +F R N
Sbjct: 1360 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 268  PWYQPSFTEVRKVXQLFRLRQXNNGVFVRLN 360
            PW  P FT +  V  LF+L + ++ +F R N
Sbjct: 1360 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 268  PWYQPSFTEVRKVXQLFRLRQXNNGVFVRLN 360
            PW  P FT +  V  LF+L + ++ +F R N
Sbjct: 1347 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,542
Number of Sequences: 27780
Number of extensions: 349967
Number of successful extensions: 965
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)