Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0147
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 107 7e-24
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 107 7e-24
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 107 7e-24
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 106 2e-23
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 106 2e-23
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 103 1e-22
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 60 1e-09
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 32 0.32
At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to... 31 0.96
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 30 1.7
At3g52860.1 68416.m05825 expressed protein 30 1.7
At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 2.2
At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 2.2
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 29 2.2
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 29 2.9
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 29 2.9
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 28 5.1
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 28 5.1
At1g16060.2 68414.m01927 ovule development protein, putative sim... 28 6.8
At1g16060.1 68414.m01926 ovule development protein, putative sim... 28 6.8
At1g18020.1 68414.m02229 12-oxophytodienoate reductase, putative... 27 9.0
At1g17990.1 68414.m02226 12-oxophytodienoate reductase, putative... 27 9.0
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 107 bits (257), Expect = 7e-24
Identities = 47/75 (62%), Positives = 61/75 (81%)
Frame = +1
Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
+ +K+ QL RLRQ NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 472 GQRIPITSNSIVGRG 516
QR +T NSIV +G
Sbjct: 160 HQRTALTDNSIVDQG 174
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +3
Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRED 695
L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+
Sbjct: 175 LGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNREN 234
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +3
Query: 9 EKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDE 188
E VPESVLK Q + +K++ IF RA+QY KEY+ KER+
Sbjct: 5 ESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKEREL 64
Query: 189 IRLARQARNRGNYYVPGEAKL 251
I+L R+A+ +G +YV EAKL
Sbjct: 65 IQLKREAKLKGGFYVDPEAKL 85
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 257 VIRIRGINQVSPKSVKLXNCL 319
+IRIRGIN + PK+ K+ L
Sbjct: 88 IIRIRGINAIDPKTKKILQLL 108
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 107 bits (257), Expect = 7e-24
Identities = 47/75 (62%), Positives = 61/75 (81%)
Frame = +1
Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
+ +K+ QL RLRQ NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 472 GQRIPITSNSIVGRG 516
QR +T NSIV +G
Sbjct: 160 HQRTALTDNSIVDQG 174
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +3
Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRED 695
L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+
Sbjct: 175 LGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNREN 234
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +3
Query: 9 EKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDE 188
E VPESVLK Q + +K++ IF RA+QY KEY+ KER+
Sbjct: 5 ESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKEREL 64
Query: 189 IRLARQARNRGNYYVPGEAKL 251
I+L R+A+ +G +YV EAKL
Sbjct: 65 IQLKREAKLKGGFYVDPEAKL 85
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 257 VIRIRGINQVSPKSVKLXNCL 319
+IRIRGIN + PK+ K+ L
Sbjct: 88 IIRIRGINAIDPKTKKILQLL 108
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 107 bits (257), Expect = 7e-24
Identities = 47/75 (62%), Positives = 61/75 (81%)
Frame = +1
Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
+ +K+ QL RLRQ NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 472 GQRIPITSNSIVGRG 516
QR +T NSIV +G
Sbjct: 160 HQRTALTDNSIVDQG 174
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +3
Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRED 695
L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+
Sbjct: 175 LGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNREN 234
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +3
Query: 9 EKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDE 188
E VPESVLK Q + +K++ IF RA+QY KEY+ KER+
Sbjct: 5 ESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKEREL 64
Query: 189 IRLARQARNRGNYYVPGEAKL 251
I+L R+A+ +G +YV EAKL
Sbjct: 65 IQLKREAKLKGGFYVDPEAKL 85
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 257 VIRIRGINQVSPKSVKLXNCL 319
+IRIRGIN + PK+ K+ L
Sbjct: 88 IIRIRGINAIDPKTKKILQLL 108
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 106 bits (254), Expect = 2e-23
Identities = 47/72 (65%), Positives = 60/72 (83%)
Frame = +1
Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
+ +K+ QL RLRQ NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 162
Query: 472 GQRIPITSNSIV 507
QRI +T NSIV
Sbjct: 163 HQRIALTDNSIV 174
Score = 95.1 bits (226), Expect = 4e-20
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +3
Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRED 695
L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+
Sbjct: 178 LGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNREN 237
Score = 61.7 bits (143), Expect = 5e-10
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +3
Query: 9 EKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDE 188
E VPESVLK + + +++ ++ IFKRAEQY KEY K+ +
Sbjct: 8 ESKVVVPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNEL 67
Query: 189 IRLARQARNRGNYYVPGEAKL 251
IRL R+A+ +G +YV EAKL
Sbjct: 68 IRLKREAKLKGGFYVDPEAKL 88
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 257 VIRIRGINQVSPKSVKLXNCL 319
+IRIRGIN + PK+ K+ L
Sbjct: 91 IIRIRGINAIDPKTKKILQLL 111
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 106 bits (254), Expect = 2e-23
Identities = 47/72 (65%), Positives = 60/72 (83%)
Frame = +1
Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
+ +K+ QL RLRQ NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 157
Query: 472 GQRIPITSNSIV 507
QRI +T NSIV
Sbjct: 158 HQRIALTDNSIV 169
Score = 95.1 bits (226), Expect = 4e-20
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +3
Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRED 695
L KH IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+
Sbjct: 173 LGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNREN 232
Score = 61.7 bits (143), Expect = 5e-10
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +3
Query: 9 EKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDE 188
E VPESVLK + + +++ ++ IFKRAEQY KEY K+ +
Sbjct: 3 ESKVVVPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNEL 62
Query: 189 IRLARQARNRGNYYVPGEAKL 251
IRL R+A+ +G +YV EAKL
Sbjct: 63 IRLKREAKLKGGFYVDPEAKL 83
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 257 VIRIRGINQVSPKSVKLXNCL 319
+IRIRGIN + PK+ K+ L
Sbjct: 86 IIRIRGINAIDPKTKKILQLL 106
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 103 bits (247), Expect = 1e-22
Identities = 45/72 (62%), Positives = 60/72 (83%)
Frame = +1
Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
+ +K+ QL RLRQ NGVF+++NKAT+NMLR EPY+ +G+PNLKSV+EL+YKRG+ KL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLN 157
Query: 472 GQRIPITSNSIV 507
QRI +T NSIV
Sbjct: 158 HQRIALTDNSIV 169
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/60 (68%), Positives = 46/60 (76%)
Frame = +3
Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRED 695
L KH IIC EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+
Sbjct: 173 LGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNREN 232
Score = 58.0 bits (134), Expect = 6e-09
Identities = 33/81 (40%), Positives = 43/81 (53%)
Frame = +3
Query: 9 EKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDE 188
E VPESVLK Q + + ++ IFKRAEQY KEY KE++
Sbjct: 3 ESKVVVPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKEL 62
Query: 189 IRLARQARNRGNYYVPGEAKL 251
I L R+A+ +G +YV EAKL
Sbjct: 63 ISLKREAKLKGGFYVDPEAKL 83
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 257 VIRIRGINQVSPKSVKLXNCL 319
+IRIRGIN + PK+ K+ L
Sbjct: 86 IIRIRGINAIDPKTKKILQLL 106
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/72 (31%), Positives = 43/72 (59%)
Frame = +1
Query: 292 EVRKVXQLFRLRQXNNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 471
+ +++ +L+ GVF + + L +PY+ +GYPN KSV++L+YK+G +
Sbjct: 102 KTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIE 161
Query: 472 GQRIPITSNSIV 507
G +P+T N+I+
Sbjct: 162 GNPVPLTDNNII 173
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +3
Query: 516 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG--WRKKTIHYVDGGDFGNR 689
L +H I+ +EDL++EI VG+ F+ FL P KLN P RKK + + +GGD GNR
Sbjct: 177 LGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQV-FSEGGDTGNR 235
Query: 690 ED 695
ED
Sbjct: 236 ED 237
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +3
Query: 15 LPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIR 194
L +PE VLK + S KKK KR E +V E+R KE D IR
Sbjct: 9 LDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAKEVDMIR 68
Query: 195 LARQAR 212
+ ++ +
Sbjct: 69 MKQRVK 74
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 177 ERDEIRLARQARNRGNYYVPGEAKLALSSESVVSTKFHRS 296
ER + AR+ G+Y++P L LS E VST RS
Sbjct: 336 ERQALNEAREGEKNGHYHMPETRGLCLSEEQTVSTVRKRS 375
>At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to
nitrate transporter (ntp2) [Arabidopsis thaliana]
GI:4490321
Length = 577
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 202 DKHAIVATTTFPGKPNWHCHPNPWYQPSFTEVRKVXQLFRL 324
DK AIVA F + PNPW S T+V +V + RL
Sbjct: 292 DKAAIVAEGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRL 332
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -1
Query: 647 LAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLPTMLLEVIG 483
LA W+ G ++LEL N+E L+D+VL + + M + ++L ++G
Sbjct: 1125 LAYNLGWLSHPGGSAIAAQLLELGKNNEILIDQVLRQELALAMPKIYSILARLLG 1179
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 81 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 191
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 585 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 680
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 585 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 680
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 646 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 512
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 690 LRNPKIPLCTMIGHSKTVSYVKFVDSSTL--VSSSTDNTLKLWDL 732
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 646 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 512
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDL 690
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 646 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 512
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDL 690
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +1
Query: 22 LYQSQCSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKS 192
+ + C +V G+ F++ +Y + G LL R G+ ++S RN A + K+
Sbjct: 134 IIEKDCGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKA 191
Query: 193 D*PDKHAIVATTTFPGKPNWH 255
PD+ + + PG+P WH
Sbjct: 192 AKPDEPSWESPWG-PGRPGWH 211
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 616 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 512
LKGH+K + L FS + I + S +C WS+
Sbjct: 900 LKGHQKRITGLAFSTALNI-LVSSGADAQICFWSI 933
>At1g16060.2 68414.m01927 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 275
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -1
Query: 674 SPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLPTMLL 495
+P+D N LL S + F P + + + S+SED D ++ P +
Sbjct: 160 NPIDTANNLLESPHSDLSPFIKPNHESDLSQSQSSSEDNDDR-----KTKLLKSSPLVAE 214
Query: 494 EVIGIRCPLSLANPR 450
EVIG P +A PR
Sbjct: 215 EVIGPSTPPEIAPPR 229
>At1g16060.1 68414.m01926 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 345
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -1
Query: 674 SPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLPTMLL 495
+P+D N LL S + F P + + + S+SED D ++ P +
Sbjct: 230 NPIDTANNLLESPHSDLSPFIKPNHESDLSQSQSSSEDNDDR-----KTKLLKSSPLVAE 284
Query: 494 EVIGIRCPLSLANPR 450
EVIG P +A PR
Sbjct: 285 EVIGPSTPPEIAPPR 299
>At1g18020.1 68414.m02229 12-oxophytodienoate reductase, putative
similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
Length = 269
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 523 LWSLFQQCCWK*LVYVVHSAWRIHVCILTHG 431
LW+ Q WK +V VHS I C + HG
Sbjct: 77 LWNRDQVEAWKPIVDAVHSKGGIFFCQIWHG 107
>At1g17990.1 68414.m02226 12-oxophytodienoate reductase, putative
similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
Length = 269
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 523 LWSLFQQCCWK*LVYVVHSAWRIHVCILTHG 431
LW+ Q WK +V VHS I C + HG
Sbjct: 77 LWNRDQVEAWKPIVDAVHSKGGIFFCQIWHG 107
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,566,535
Number of Sequences: 28952
Number of extensions: 329319
Number of successful extensions: 901
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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