Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0145
         (662 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    64   2e-09
UniRef50_Q97A12 Cluster: TVG1020030 protein; n=1; Thermoplasma v...    33   6.1  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 64.5 bits (150), Expect = 2e-09
 Identities = 28/38 (73%), Positives = 32/38 (84%)
 Frame = +3

Query: 285 FLLLRWMDDLTAHLVLSGILEPIDIYNVNAPPTLRYKF 398
           FLLLRW+D+LTAHLVLSG   P  +Y+VNAPPT RYKF
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSPRHLYDVNAPPTSRYKF 191


>UniRef50_Q97A12 Cluster: TVG1020030 protein; n=1; Thermoplasma
           volcanium|Rep: TVG1020030 protein - Thermoplasma
           volcanium
          Length = 164

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 434 LQTETHYCFTAEIGGVVVPTRADTQGHTTSNYANYYFADLIFI-TRCYFFTVEVNQGIFG 610
           +   T+Y  + E+GG+ VP    T    ++ Y NY     I I  R Y   V++N  I G
Sbjct: 29  ITNSTYYNISEELGGLYVPFNNGTIQSNSTIYVNYSIISAITIFDRYYMPQVQINTTIDG 88

Query: 611 KYVFLLPKF 637
             +++   F
Sbjct: 89  VTLYINGSF 97


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,153,795
Number of Sequences: 1657284
Number of extensions: 13174108
Number of successful extensions: 29657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29641
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)