Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0145
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   2.4  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    25   7.4  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.4  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   7.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.4  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 23/77 (29%), Positives = 32/77 (41%)
 Frame = -2

Query: 346 SSIPLNTRWAVRSSIHLSNKKKICNYTESLNFLYLYQYNNIFNFLTQKL*NLINGESILP 167
           S IP  TR    S +  ++   +C    SL  +  Y YN  F+FL Q L  + N    L 
Sbjct: 669 SFIPSITRLNELSQVSFNHFYFLCKGDISLENILPYNYNKWFSFLLQ-LRKVCNDSEALK 727

Query: 166 IFFKAYNLKY*ESQMKF 116
           I     +    +SQ  F
Sbjct: 728 IIDNCIDKNMQKSQEGF 744


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 193 NFIIFVLEN*RYC--CIGINIKSLSFQCSYKFFFYCLDGWTTSQ 318
           N + F+ E  R C  C+       + +C + F + C++GWT+ +
Sbjct: 244 NKLPFIPEGNRKCSLCMEFIHCPAATECGHIFCWSCINGWTSKK 287


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 265 QCSYKFFFYCLDGWTTSQPTWC 330
           QC++ F   C+D W TS    C
Sbjct: 543 QCNHFFHRECIDQWLTSSQNSC 564


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 265 QCSYKFFFYCLDGWTTSQPTW 327
           +C Y+F + CL  WT     W
Sbjct: 311 KCKYEFCWVCLGPWTEHGNNW 331


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 11/65 (16%)
 Frame = -2

Query: 298  LSNKKKICNYT-----ESLNFLYLYQYN-NIFNFLTQKL*NLI-----NGESILPIFFKA 152
            L NK+   ++T     E L  L + +Y+ +IF  + +KL +LI     NG S LP F +A
Sbjct: 856  LMNKRNAISHTYMQIQEQLFQLDICEYSGDIFLTIQRKLQDLIDLLYVNGYSNLPPFVRA 915

Query: 151  YNLKY 137
             NL++
Sbjct: 916  LNLRF 920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,229
Number of Sequences: 5004
Number of extensions: 57816
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)