Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0145
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0281 - 20334578-20334961,20335859-20336005,20336088-203361...    31   0.82 
05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336...    29   3.3  
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22...    28   5.8  
04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174     28   7.6  

>01_05_0281 -
           20334578-20334961,20335859-20336005,20336088-20336141,
           20336391-20336555,20337331-20337855
          Length = 424

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 467 EIGGVVVPTRADTQGHTTSNYANYYFADLIFITRCYFFTVEV 592
           + GG VV TRAD   HT +   + +FA   F    YF  +EV
Sbjct: 333 QFGGEVVNTRADGGAHTATQMGSGHFAGEGFGGASYFRNLEV 374


>05_05_0393 -
           24632570-24632629,24633212-24633370,24633496-24633612,
           24633697-24633831,24634140-24634337,24634449-24634529,
           24634845-24635141,24635231-24636013,24636589-24636765
          Length = 668

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 300 WMDDLTAHLVLSGILEPIDIYNVN 371
           W D +TA L  SG+LEP D+  +N
Sbjct: 498 WKDPITAALAQSGLLEPKDVDPLN 521


>08_01_0030 +
           222748-222829,223224-223448,223800-224204,224773-225389
          Length = 442

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 268 CSYKFFFYCLDGWTTSQPTWC 330
           C +KF   C+D W TS  T+C
Sbjct: 235 CRHKFHATCVDMWLTSWKTFC 255


>04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174
          Length = 202

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 268 CSYKFFFYCLDGWTTSQPT 324
           C + F  YCLD W   Q T
Sbjct: 115 CHHNFHLYCLDAWLLKQTT 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,147
Number of Sequences: 37544
Number of extensions: 331968
Number of successful extensions: 698
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)