Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0145
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine re...    31   0.96 
U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine rece...    29   3.9  
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    29   3.9  
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    28   6.8  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    28   6.8  
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    27   9.0  

>AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein87 protein.
          Length = 351

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 239 PIQQYL*FSNTKIIKFD*WRIHIAYFF*SLQFKILGITNEILKIRFYLLNNIIYL 75
           P Q +   SN  ++  D + IH       + F +LG+  E+++I FYL   + YL
Sbjct: 189 PSQDFFTASNIFVLCIDDYHIHFL-----IAFTVLGVVVEVIQILFYLTCCVYYL 238


>U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein88 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -1

Query: 239 PIQQYL*FSNTKIIKFD*WRIHIAYFF*SLQFKILGITNEILKIRFYLLNNIIYL 75
           P Q++   SN  ++  D +  HI +    + F +LG+  E+++I FYL   + YL
Sbjct: 189 PSQEFFTGSNIFVLCIDDY--HIQFL---IAFTVLGVLAEVIQILFYLTCCVYYL 238


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 310 SSIHLSNKKKICNYTESLNFLYLYQYNNIFNFLTQ 206
           SSIH+ ++KKI N+    NFL L   NN    +T+
Sbjct: 683 SSIHILSEKKISNHANLPNFLPLAGGNNCGATITE 717


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -1

Query: 557 KSNLQNNNSRNYWWYDPECPHG*VPLPRLFLP*SSNAFRFEG---WGSRCNYTETLEFIS 387
           +S LQ   +  YW  D ECP+  +   R  +    +  R  G    GS CN    LE++ 
Sbjct: 526 ESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLCGSCCNEKAFLEYLQ 585

Query: 386 QSGWRIYIVDV 354
           + G ++  V V
Sbjct: 586 EEGKKLQAVRV 596


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 340 IPLNTRWAVRSSIHLSNKKKICNYTESLNFLYLYQY 233
           +P N R  +R + H++   +IC + E++ +L+ Y Y
Sbjct: 603 VPYNKRLLLRYNAHMN--VEICGFIEAVKYLFKYVY 636


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -1

Query: 557 KSNLQNNNSRNYWWYDPECPHG*VPLPRLFLP*SSNAFRFEG---WGSRCNYTETLEFIS 387
           +S LQ   +  YW  D ECP+  +   R  +    +  R  G    GS CN    LE++ 
Sbjct: 526 ESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLCGSCCNEKAFLEYLQ 585

Query: 386 QSGWRIYIVDVYGLQY 339
           + G ++  V +   Q+
Sbjct: 586 EEGKKLQAVRLLPPQF 601


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,043
Number of Sequences: 27780
Number of extensions: 322971
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)