Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0145
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    24   1.1  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 512 HTTSNYANYYFADLIFITRCYFFTVEVNQGIFGKYVFLLPKFVP-VC 649
           H T+ + +Y     I++     F++++N+ +   Y  ++P F P +C
Sbjct: 122 HPTAAFISYGTLFFIYVQPSATFSLDLNKVVSVFYTAVIPMFSPFIC 168


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 286 KKICNYTESLNFLYLYQYNNIFNFLTQKL*NLINGESILPI 164
           K I + + + N+     YNN +N   +KL   IN    +P+
Sbjct: 80  KIISSLSNNYNYSNYNNYNNNYNNYNKKLYYNINYIEQIPV 120


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 280 ICNYTESLNFLYLYQYNNIFNF 215
           + N T   N  Y Y YNN +N+
Sbjct: 85  LSNKTIHNNNNYKYNYNNKYNY 106


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 422 RCNYTETLEFISQSGW 375
           RCN T    +I   GW
Sbjct: 363 RCNATGAFSWIGSDGW 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,660
Number of Sequences: 438
Number of extensions: 4304
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)