Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0145
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18460.1 68418.m02174 expressed protein predicted proteins, A...    32   0.39 
At3g58900.1 68416.m06564 F-box family protein contains F-box dom...    30   1.2  
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-...    30   1.2  
At1g22670.1 68414.m02833 protease-associated zinc finger (C3HC4-...    29   2.8  
At1g33600.1 68414.m04159 leucine-rich repeat family protein cont...    28   4.8  

>At5g18460.1 68418.m02174 expressed protein predicted proteins,
           Arabidopsis thaliana Pfam profile PF03080: Arabidopsis
           proteins of unknown function
          Length = 430

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 422 GYPTLQTETH---YCFTAEIGGVVVPTRADTQGHTTSNYANYYFADLIFITRCYFFTVEV 592
           GY   +  TH   +  T E GG VV TRA  + HTT+   + +F D  F    YF  +EV
Sbjct: 323 GYWPAELFTHLADHATTVEWGGEVVNTRASGR-HTTTQMGSGHFPDEGFGKASYFRNLEV 381


>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 327

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 229 CCIGINIKSLSFQC-SYKFFFYC 294
           CC  +N+KSLSF   S  +F+YC
Sbjct: 217 CCSVVNLKSLSFDAPSLVYFYYC 239


>At1g71980.1 68414.m08320 protease-associated zinc finger
           (C3HC4-type RING finger) family protein identical to
           ReMembR-H2 protein JR702 [Arabidopsis thaliana]
           gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
           protease-associated (PA) domain and Pfam domain,
           PF00097: Zinc finger, C3HC4 type (RING finger);
           identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
           cds GI:6942148
          Length = 448

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 268 CSYKFFFYCLDGWTTSQPTWC*VVYWSP*TST 363
           C +KF   C+D W TS  T+C V      TST
Sbjct: 250 CCHKFHAACVDSWLTSWRTFCPVCKRDARTST 281


>At1g22670.1 68414.m02833 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326
          Length = 422

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 268 CSYKFFFYCLDGWTTSQPTWC 330
           CS+KF   C+D W  S  T+C
Sbjct: 250 CSHKFHVACVDSWLISWRTFC 270


>At1g33600.1 68414.m04159 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to
           gi|9294355|dbj|BAB02252 [Arabidopsis thaliana]
          Length = 478

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +2

Query: 455 CFTAEIGGVVVPTRADTQGHTTSNYANYYFADLIFITRCYFFTVEVNQGIFGKYVFLLP 631
           C T  + G+ +  ++D  G   S   +   A L  +   YF  +    G F +++F LP
Sbjct: 68  CLTNRVTGLTINGQSDVTGSFLSGTISPSLAKLQHLVGIYFTNLRNITGSFPQFLFQLP 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,851,854
Number of Sequences: 28952
Number of extensions: 282939
Number of successful extensions: 622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)