Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0144
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    40   0.060
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    39   0.10 
UniRef50_A4CIN7 Cluster: Putative patatin-like phospholipase; n=...    38   0.32 
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    36   0.97 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.3  
UniRef50_Q9N8A1 Cluster: Vir5 protein; n=1; Plasmodium vivax|Rep...    34   3.9  
UniRef50_UPI0000DA226A Cluster: PREDICTED: hypothetical protein;...    33   6.8  
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 39.9 bits (89), Expect = 0.060
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = -3

Query: 244  VSFLWSGR*QLGCGRQWLGSAPGIAEVHGRR 152
            +SF   G  ++  GRQ LGSAPGIAEVHGRR
Sbjct: 956  MSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 39.1 bits (87), Expect = 0.10
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = -1

Query: 465 VLTDPSAPITLALDTFSSN 409
           VLTDPS PITLALDTFSSN
Sbjct: 919 VLTDPSDPITLALDTFSSN 937


>UniRef50_A4CIN7 Cluster: Putative patatin-like phospholipase; n=2;
           Flavobacteriales|Rep: Putative patatin-like
           phospholipase - Robiginitalea biformata HTCC2501
          Length = 759

 Score = 37.5 bits (83), Expect = 0.32
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 148 VTVAHGLQQCQGQSQATACRSQAATYRSIGNLQLKRAASQMKLQPD 285
           V V HGL+  +    AT    Q   YR++GN++ KRA + + ++PD
Sbjct: 238 VDVQHGLRDREALLSATEILLQINNYRTVGNMEEKRARTDIYIKPD 283


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 35.9 bits (79), Expect = 0.97
 Identities = 16/21 (76%), Positives = 16/21 (76%)
 Frame = -1

Query: 156 DGNHSPSGGPCAPLPTRAIKK 94
           DGNHSPSG P A LPTRA  K
Sbjct: 3   DGNHSPSGRPYASLPTRAKMK 23


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = -2

Query: 329 PLSFSSDLLSGSRFRSGCSF 270
           PLSFS DLLSGSRFR+G  +
Sbjct: 396 PLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q9N8A1 Cluster: Vir5 protein; n=1; Plasmodium vivax|Rep:
           Vir5 protein - Plasmodium vivax
          Length = 461

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 467 CKELLSTFIIM*SFNRSQNDKQSHS-YSNFSKFCVRLMDLRLHFIAFRAGDQKYISCKNN 643
           C++ +S F  +   NRS ++ Q H  Y  +  F +R   L L  I+       YI  KNN
Sbjct: 56  CRKYVSFFKKIKHNNRSYSNPQDHKKYPEYLNFWIR-HQLELQSISKYDRSVLYIHLKNN 114

Query: 644 YPHF 655
           YP F
Sbjct: 115 YPQF 118


>UniRef50_UPI0000DA226A Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 113

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 153 RRPWTSAMPGAEPSHCLPQPSCYLPLHRKLTT 248
           R P ++  PG+ P+HC P PS   PL  +L +
Sbjct: 21  RDPLSAPFPGSTPAHCTPPPSLRGPLSARLAS 52


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 126 TAHLMVSGYRRPWTSAMPGAEPSH-CL 203
           T +L+   +R  WTS +PGA+P H CL
Sbjct: 37  TIYLVDDNHRHSWTSTIPGAQPDHRCL 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,352,107
Number of Sequences: 1657284
Number of extensions: 12253075
Number of successful extensions: 28866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28858
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)