Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0144
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968...    30   2.1  
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526...    29   3.6  
08_02_1598 + 28130385-28130881,28130957-28131269                       28   6.3  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    28   8.3  
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    28   8.3  

>04_04_0998 -
           29996117-29996242,29996345-29996486,29996613-29996812,
           29997112-29997497,29997769-29998318,29998949-29999296
          Length = 583

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 689 SKKSGCNPEPVGNVGNYFCSLC 624
           SK +GCN    GN G +FC  C
Sbjct: 463 SKTAGCNKMVCGNCGQFFCFRC 484


>02_05_0389 +
           28551649-28551903,28552328-28552402,28552482-28552605,
           28552692-28552978,28553147-28553482,28553813-28553869,
           28554156-28554382,28554465-28554627,28554912-28554938
          Length = 516

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 689 SKKSGCNPEPVGNVGNYFCSLC 624
           SK  GCN    GN G +FC  C
Sbjct: 422 SKIEGCNKMTCGNCGRFFCYRC 443


>08_02_1598 + 28130385-28130881,28130957-28131269
          Length = 269

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 661 LWEMWVI--IFAAYVFLVPCSEGYEMKPKIH*PNTKFT 554
           +W  W +  +  A VFLV  + G    PK+H  + KFT
Sbjct: 1   MWCTWALGRVVLAVVFLVALAAGDAAPPKVHRNHGKFT 38


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 595  HSLQSRGPKIHKLQK*LPTFPTGSGLQPDFFDPGAAR 705
            H L+++ PK  +LQK L    +G    P FFD  AAR
Sbjct: 1042 HWLKNQPPKRVELQKALGNHLSGKERYPPFFDDIAAR 1078


>01_07_0238 +
           42209407-42209964,42210039-42210561,42212577-42212665,
           42212981-42213191,42213265-42213446,42213573-42213812,
           42214691-42214878,42215230-42215323,42215407-42215463,
           42215552-42215686,42216460-42216525,42216745-42216858,
           42217849-42218010,42218093-42218221,42218323-42218424,
           42219428-42219504,42219600-42219957
          Length = 1094

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 164 PWATVTTHHQVGRVLLCLQ 108
           PW++VT HH  G+V+L ++
Sbjct: 904 PWSSVTKHHFKGKVVLIME 922


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,066,416
Number of Sequences: 37544
Number of extensions: 342584
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)