Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0144
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   8.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 31  GEYVALKKIVVAR*HRTFYFLFFYCPC 111
           GEY  LK  ++ +   ++Y +  Y PC
Sbjct: 226 GEYSCLKVDLLFKREFSYYLIQIYIPC 252


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 31  GEYVALKKIVVAR*HRTFYFLFFYCPC 111
           GEY  LK  ++ +   ++Y +  Y PC
Sbjct: 226 GEYSCLKVDLLFKREFSYYLIQIYIPC 252


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 131 PPDGEWLPSPMDFSNARG 184
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
           +YR+ G     R  S+   + DR  D L   +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
           +YR+ G     R  S+   + DR  D L   +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
           +YR+ G     R  S+   + DR  D L   +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
           +YR+ G     R  S+   + DR  D L   +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
           +YR+ G     R  S+   + DR  D L   +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
           +YR+ G     R  S+   + DR  D L   +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 220 TYRSIGNLQLKRAASQMKLQPDRNRDPLRRSDEK 321
           +YR+ G     R  S+   + DR  D L   +EK
Sbjct: 244 SYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEK 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,597
Number of Sequences: 438
Number of extensions: 3816
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)