Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0143
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    30   0.36 
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    27   3.4  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   4.5  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   5.9  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    26   5.9  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   7.9  

>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 344 LTNLMKKMLSYGQYNMDKYTYV 409
           LTN +K+++SY +YNM + TY+
Sbjct: 193 LTNYLKEVISYRKYNMMEETYI 214


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 473 RVCNIFTVFKNMSRNILANSSASPESK 553
           + CNIF+ F+N+++    NSS  PE K
Sbjct: 24  KTCNIFSSFRNVAQQ--PNSSTVPEVK 48


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 503 NMSRNILANSSASPESKWRKLPPMSWSHS 589
           N   N+L N + +P       PP++WS S
Sbjct: 81  NTGGNVLPNPALTPVRNMSNKPPLTWSPS 109


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 290 GRGFQCPQTSSGYNSAVTTLD 228
           G G  C +TS GYN++ + +D
Sbjct: 51  GNGTDCTETSFGYNASSSLID 71


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 224 KDRAS*RHCYSLKKS-EDIENLARLVLGGLEIVGDDAKVIH 343
           K + S R C S   S E+IE LA L+    EIV D  KVI+
Sbjct: 467 KVQPSLRICISTGHSAEEIEKLALLIKEKTEIVFDKHKVIN 507


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 536 ASPESKWRKLPPMSWSHSLMSTSMDI-SNAMY 628
           AS  S WR+LP +     L S S+++ SN +Y
Sbjct: 124 ASDTSSWRELPSIPTLEELTSKSVELPSNNIY 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,424
Number of Sequences: 5004
Number of extensions: 56169
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)