Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0143
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 30 1.5
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 30 1.5
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640... 29 2.6
02_01_0680 + 5054306-5056411,5057200-5057243,5057549-5057664,505... 29 3.5
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822... 29 4.6
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017 29 4.6
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 29 4.6
04_04_0270 - 24061852-24063264 28 6.1
12_01_0399 + 3152219-3152721,3152995-3153127,3155013-3155097,315... 28 8.1
09_06_0214 + 21616019-21616086,21616205-21616252,21616336-216164... 28 8.1
02_02_0034 - 6246183-6246553,6246672-6249699 28 8.1
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 428 TCPRKSARRCTCPCCIGH 375
TCPR +AR C+ PC GH
Sbjct: 47 TCPRCNARYCSLPCYKGH 64
>06_03_1318 -
29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -1
Query: 517 ISGHVLENGEDVANSFHDHPEDRIAETGSVHVQGSRHVGVLVHVVLAIAQHFLHQVGQVD 338
I G+ DVA S D E R T + + G H G L +L H + +VD
Sbjct: 314 IDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDL-RVD 372
Query: 337 NFSIVA 320
NF++V+
Sbjct: 373 NFTVVS 378
>01_06_0733 -
31563246-31563462,31563721-31563947,31563983-31564018,
31564750-31564862,31565872-31565950,31566739-31566956,
31567041-31567146,31568518-31568730
Length = 402
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 424 HVHYLSPRSCLLDDHETSLQHLHRFQEHV 510
HVHY++P D E L LH F +H+
Sbjct: 117 HVHYVAPSFWAWKDGERRLAKLHNFVDHL 145
>02_01_0680 +
5054306-5056411,5057200-5057243,5057549-5057664,
5057942-5058036
Length = 786
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -1
Query: 517 ISGHVLENGEDVANSFHDHPEDRIAETGSVHVQGSRHVGVLVHVVLAIAQHFLHQVGQVD 338
I G+ DVA S D E R T + + G H G L +L H + +VD
Sbjct: 313 IDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDL-RVD 371
Query: 337 NFSIV 323
NF++V
Sbjct: 372 NFTVV 376
>08_01_0841 +
8223768-8223871,8227749-8228745,8228779-8228828,
8228896-8230396
Length = 883
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 446 DPVFWMIMKRVCNIFTVFKNMSRNILANSSASPE 547
D W+ + + N+ VFK+M + + +SS+ PE
Sbjct: 217 DSYVWIELSQDVNVTKVFKDMMKQLFDDSSSQPE 250
>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
Length = 824
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 526 REYISGHVLENGEDVANSFHDHPEDRIAETGSVHVQGSRHVGVLVHVVLAI 374
++Y++ L N E + ++ PE +TG H Q +R + VH + I
Sbjct: 629 KDYLTFFCLGNREAKSAGEYEPPEQAEPDTGYFHAQQNRRFMIYVHTKMMI 679
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +2
Query: 296 VLGGLEIVGDDAKVIHLTNLMKKMLSYGQYNMDKYTYVPTSLDMYTTCLRDPVF--WMIM 469
V+ +E VG + K + ++M+SY + TY+P +++ C+R+P F W +
Sbjct: 138 VVREIEAVGGNVKA----SANREMMSYSYAALK--TYMPEMVEVLIDCVRNPAFLDWEVK 191
Query: 470 KRVCNIFTVFKNMSRN 517
+++ + S N
Sbjct: 192 EQIMKLKAELAEASSN 207
>04_04_0270 - 24061852-24063264
Length = 470
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 302 RGPDGRGFQCPQTSSGYNSAVTTL 231
RG DGRG+ C G+ SAV ++
Sbjct: 403 RGADGRGYYCVAVIDGHGSAVRSV 426
>12_01_0399 +
3152219-3152721,3152995-3153127,3155013-3155097,
3155321-3155586
Length = 328
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +2
Query: 461 MIMKRVCNIFTVFKNMSRNILANSSASPESKWRKLPPMSWSHSLMSTSMDISNAMYLDAT 640
M +R+ + + ++ ILAN ++ SK RK+ S + T + + T
Sbjct: 150 MPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLT 209
Query: 641 EMQNKTSDMT 670
+Q TS +T
Sbjct: 210 LLQRDTSGLT 219
>09_06_0214 +
21616019-21616086,21616205-21616252,21616336-21616427,
21616555-21616645,21617660-21617720,21617810-21617887,
21617979-21618029,21618118-21618191,21618306-21618378,
21618762-21618819,21618899-21618969,21619045-21619110,
21619327-21619359,21619445-21619497,21619572-21619647,
21619729-21619785,21619874-21619957,21620037-21620135,
21620260-21620364,21620575-21620643,21621019-21621108
Length = 498
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 219 TGKIERRDGTVIA*RSLRTLKTSPVWSSV 305
+GK+E DG V+ +SL + TS W S+
Sbjct: 455 SGKLEIPDGAVLENKSLLLIATSSAWQSM 483
>02_02_0034 - 6246183-6246553,6246672-6249699
Length = 1132
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +2
Query: 506 MSRNILANSSASPESKWRKLPPMSWSHSLMSTSMDISNAMYLDATEMQNKTSDMTFYGPH 685
+ RN L S + +WR+L ++ SH+ S SM S + + S F GP
Sbjct: 569 LDRNNLNGSIPANIGQWRQLEKLNLSHNSFSGSMP-SEVFKISSLSQNLDLSHNLFTGPI 627
Query: 686 AP 691
P
Sbjct: 628 LP 629
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,363,802
Number of Sequences: 37544
Number of extensions: 398996
Number of successful extensions: 1127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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