Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0143
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17227| Best HMM Match : KE2 (HMM E-Value=4.1)                       29   2.7  
SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             28   6.2  
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)                   28   8.3  

>SB_17227| Best HMM Match : KE2 (HMM E-Value=4.1)
          Length = 162

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 58  GTSP*RPVTGLKSVFPAVMKCPSARTTWSLPRK 156
           G  P + + GLK   P   KCPS+R T SLP K
Sbjct: 14  GAEPSKNLPGLKPS-PKKRKCPSSRRTVSLPPK 45


>SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 478 NSFHDHPEDRIAETGSVHVQGSRHVGVLVHVVLAI 374
           ++ H HPED + + GSV++        L   V+A+
Sbjct: 56  STHHQHPEDLVYDAGSVYLGTKTSPASLARAVMAV 90


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 311  LGHRGPDGRG--FQCPQTSSGYNSAVTTLDLSSKDTLSDH 198
            +GH  PDG G  + CP+ + G ++A  T+D     T   H
Sbjct: 1142 VGHYCPDGTGEPYNCPKGTFGNDTAYKTVDECWNCTAGQH 1181


>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
          Length = 292

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 343 LDQLDEENAELWPIQHGQVHLRADFLGHV 429
           L  LD   A +WP++H Q+H R  ++  V
Sbjct: 118 LISLDRMFATVWPLRHRQIHPRMYYISSV 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,047,144
Number of Sequences: 59808
Number of extensions: 455494
Number of successful extensions: 1191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)