Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0143
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC006655-6|AAF39878.2|  383|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    28   7.3  

>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 633  SRYIALLMSMLVLINECDQLIGGNFLHFD 547
            S++I + + M  LIN C+QL+ G    FD
Sbjct: 2452 SQWITMAVEMKALINSCEQLVRGPTRAFD 2480


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 633  SRYIALLMSMLVLINECDQLIGGNFLHFD 547
            S++I + + M  LIN C+QL+ G    FD
Sbjct: 2461 SQWITMAVEMKALINSCEQLVRGPTRAFD 2489


>AC006655-6|AAF39878.2|  383|Caenorhabditis elegans Hypothetical
           protein H10D18.6 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 308 LEIVGDDAKVIHLTNLMKKMLSYGQYNMDKYTY 406
           +E VG    + H+T    KM S+ +YN D Y Y
Sbjct: 301 VEFVGKYGPLHHMTPYSLKMSSFQRYNYDIYVY 333


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 39  DVKPMMWNEPLETGYWPKIRLPSGD 113
           +  P++W EP  TG   KIR+P  D
Sbjct: 738 EADPIVWKEPAGTGSKMKIRVPPTD 762


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 39  DVKPMMWNEPLETGYWPKIRLPSGD 113
           +  P++W EP  TG   KIR+P  D
Sbjct: 738 EADPIVWKEPAGTGSKMKIRVPPTD 762


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,980,904
Number of Sequences: 27780
Number of extensions: 330266
Number of successful extensions: 999
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)