Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0143
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR cla...    32   0.41 
At4g26020.1 68417.m03747 expressed protein weak similarity to ca...    30   1.7  
At4g15870.1 68417.m02412 terpene synthase/cyclase family protein       29   3.9  
At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi...    28   5.1  
At4g31470.1 68417.m04471 pathogenesis-related protein, putative ...    27   8.9  
At1g21670.1 68414.m02712 expressed protein similar to TolB prote...    27   8.9  

>At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 833

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
 Frame = +2

Query: 227 DRAS*RHCYSLKKSEDIENLARLVLGG-LEIVGDDAKVIHLTNLMKKMLSYGQYNMDKYT 403
           D +  +H   L       NL  L++ G + +V   + +      ++K+L        K  
Sbjct: 484 DLSESKHLKELPDLSTATNLEYLIMSGCISLVELPSSI----GKLRKLLMLSLRGCSKLE 539

Query: 404 YVPTSLDMYTTCLRDPVFWMIMKRVCNIFTVFKNMSRNILANSSASPESK-W---RKLPP 571
            +PT++++ +    D    +++K+   I T  K++     A        K W   RKL  
Sbjct: 540 ALPTNINLESLDYLDLTDCLLIKKFPEISTNIKDLKLTKTAIKEVPSTIKSWSHLRKLE- 598

Query: 572 MSWSHSL--MSTSMDISNAMYLDATEMQ 649
           MS+S +L  +  ++DI   +Y++ TEMQ
Sbjct: 599 MSYSENLKELPHALDIITTLYINDTEMQ 626


>At4g26020.1 68417.m03747 expressed protein weak similarity to
           cardiac muscle factor 1 [Gallus gallus] GI:14422164
          Length = 247

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
 Frame = +1

Query: 352 LDEENAELWPIQHGQVHLRADFLGH---VHYLSPRSCLLDDHETSLQHLHRF------QE 504
           L EEN  L  +    ++  AD L H    H L      ++D   S +H HR       Q+
Sbjct: 54  LKEENERLKKLYTESLNNFADQLEHRTKCHSLKEELKRVNDENKSKEHEHRNALESLRQK 113

Query: 505 HVPKYTREQFSFPGVKVEKITTDELV 582
           HV K    ++    + VEK T D ++
Sbjct: 114 HVTKVEELEYKIRSLLVEKATNDMVI 139


>At4g15870.1 68417.m02412 terpene synthase/cyclase family protein
          Length = 598

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 551 KWRKLPPMSWSHSLMSTSMDIS--NAMYLDATEMQNKTSDMTFY 676
           K+++LP   W H  +S  +D+S  NA+  +   ++ +  +M  +
Sbjct: 68  KFKRLPLSKWGHHFLSAQVDVSEMNALAQEIERLKPEVGEMLMF 111


>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P28290 Sperm-specific
           antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
           sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 649

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 624 IALLMSMLVLI-NECDQLIGGNFLHFDSGEAELFASIFRDMFLK 496
           I++L S+L L+ +  D L      +  SG+ EL A  F+D+ LK
Sbjct: 251 ISVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQDLVLK 294


>At4g31470.1 68417.m04471 pathogenesis-related protein, putative
           similar to pathogenesis related protein-1 from  Zea mays
           GI:3290004; contains Pfam profile PF00188: SCP-like
           extracellular protein
          Length = 185

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 485 IFTVFKNMSRNILANSSASPESKWR---KLPPMSWSHSL 592
           IF+  K ++RN +      P +  R   +LPP+ WS+SL
Sbjct: 38  IFSQDKALARNTIQQQFLRPHNILRAKLRLPPLKWSNSL 76


>At1g21670.1 68414.m02712 expressed protein similar to TolB protein
           precursor (SP:P50601) {Pseudomonas aeruginosa}
          Length = 703

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +3

Query: 9   GLERLSHKMCDVKPMMWNEPLE-TG--YWPKIRLPSGDEMPVRQNNMVVATKDN 161
           GL RL+H   +  P MW   ++ TG   WPK   PS      +  N  V  K N
Sbjct: 636 GLTRLTHNSVEDGPPMWFPKIKATGDVAWPKRFGPSCSIQDFKTQNTTVKMKMN 689


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,189,483
Number of Sequences: 28952
Number of extensions: 310133
Number of successful extensions: 892
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)