Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0142
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 28 0.95
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 28 1.3
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 1.7
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 2.9
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 5.1
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 26 5.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 5.1
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 5.1
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 25 6.7
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 25 8.9
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 93 GYSTVDYLCRYFWCRRLGRYRGFWGNTSRFFE 188
GYS YLC +F + R +W N + FE
Sbjct: 159 GYSFFYYLCFWFLGLYIYRSSNYWSNEEKLFE 190
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +3
Query: 375 RKGAIHVISAFS-TMHSLVIGQIKTDKKSNEITA-IP----ELLNMLDIKGKSSKPMRWV 536
R +HV SA S + SL+ +K+ + E A +P E +M + K K +R+V
Sbjct: 237 RIAGVHVESASSFPVKSLIPEPLKSAVNAEEFLAGLPNFDSEFASMREEAEKEGKVVRFV 296
Query: 537 GQKDIAEK 560
G+ D+A K
Sbjct: 297 GEADVANK 304
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 285 NWMLDYHSSDDKDVIAIXGKIHRHSYDKSRRKGAIHVISAFSTMHSLVIGQIK-TDKKSN 461
NW++DYH + DK + + ++ ++ S T + ++ D +N
Sbjct: 509 NWVMDYHQASDKCTVCTPASLSKNK-KPYMQENEHQKDSHEETFNEQIVSHFNLNDNNNN 567
Query: 462 EITAIP 479
++ +IP
Sbjct: 568 KVLSIP 573
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 235 QWYREQEYHFQNHHIASKNRDVFPQNPLYL-PSLLH 131
QW E YHF S+ + + +NP ++ PS+ H
Sbjct: 179 QWSSEMNYHFLLSKFQSRLIEHYNKNPNFVQPSIFH 214
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 285 NWMLDYHSSDDKDVIAIXGKIHRHSYDKSRRKGAIHVISAFSTMHS 422
N +L ++ +DD++ I HS+ K +RK AI + F+ S
Sbjct: 809 NDLLPFNETDDEEEIQTVDHSETHSHKKKKRK-AIKDLPVFADAES 853
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 179 IF*SNMVILKMVFLFTIPLPELY-PVL 256
IF NM+ + +++L +P+PE Y PVL
Sbjct: 259 IFWVNMIYMFVMYLTLLPVPETYAPVL 285
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 40 ISIIPDYRQAWKVEHKLSDILLLTICAVISGAE 138
+ +I D+ W HK LLLT+ +++ E
Sbjct: 572 VYVIVDFFSLWTTRHKFFRFLLLTVQSLVFAIE 604
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 331 QLXEKYTGILMTRVAVRERFMSLVRSQQCTVWSSDRSRRIRNPM 462
+L Y L+ + + F LVR+ T+W S+ R NP+
Sbjct: 433 ELLHLYREKLLDKTELLNSFSKLVRNDNLTLWFSEFIRWSDNPI 476
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 375 RKGAIHVISAFSTMHSLVIGQIKTDKKSNEITAIPELLNMLDIKGK 512
R+G + + F+T+ +I D S IT P++ N ++ KG+
Sbjct: 11 RQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGE 56
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 559 FSAISFWPTHRIGFDDFPLISSMLRSSGIAVISLDFLSVLICPMTRLCIVEN 404
F S W + + +F +SS +++ +A S D ++ + LC VEN
Sbjct: 122 FGQCSKWISANVPNAEFVSVSSTSQAAALA--SKDITGTIVAISSELCAVEN 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,642
Number of Sequences: 5004
Number of extensions: 61749
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -