Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0142
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 33 0.24
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 30 1.3
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 29 3.0
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 28 5.2
05_02_0112 + 6739727-6739958,6740048-6740263,6740349-6740774,674... 28 6.9
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 27 9.2
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 32.7 bits (71), Expect = 0.24
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Frame = +3
Query: 219 CSRYHCQSCILYCPAKFHESFINWMLDYHSSDDKDVIAIXGKIHRHSYDKSRRKGAI--- 389
C+ HC +L + SF+ MLDY ++ K ++++ K H G++
Sbjct: 630 CNLIHCS--LLSRVFEEKSSFLQVMLDYVTNAIKHIVSVVMKEHAELSHGLTNLGSVFDT 687
Query: 390 --HVISAF-STMHSLVIGQIKTDKKSNEITAIPELLNML 497
+S+F S MHS + + + K++ + + ELL+ L
Sbjct: 688 TGSALSSFKSFMHSPLFSLWRVNNKTSSVLGVTELLDEL 726
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 261 AKFHESFINWMLDYHSSDDKDVIAIXGKIHRHSYDKSRRKGAIHVISAFSTMHS 422
+ F S ++++ + S D D ++ + RHS+D RR + H S FS HS
Sbjct: 317 SSFSGSEVDYIDEGGSPSDSDAVS---PMSRHSWDYIRRHNSPHSASTFSRAHS 367
>08_02_0499 -
17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 253 YRIQLWQWYREQEYHFQNHH 194
Y Q+WQ+Y++Q Y+ Q H
Sbjct: 918 YASQMWQYYQQQMYYLQAQH 937
>12_01_0503 -
3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 2 RRTKWNLKN*WNIFLLSPITDK 67
R W+L N +N FLL PI DK
Sbjct: 578 RYVTWSLHNKFNCFLLMPIVDK 599
>05_02_0112 +
6739727-6739958,6740048-6740263,6740349-6740774,
6740992-6741080,6741259-6741387,6741788-6742018
Length = 440
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 55 DYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETH 174
DY AWK E L + + V S A G E + D G H
Sbjct: 169 DYSFAWKAEWSLEKVKTMVPSVVASMAGGIERLLDEGARH 208
>02_04_0157 +
20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 339 GKIHRHSYDKSRRKGAIHVISAFSTMH 419
G+I RH Y+ RRK A I + MH
Sbjct: 783 GQIARHYYEDLRRKAATLTIQTYYRMH 809
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,384,421
Number of Sequences: 37544
Number of extensions: 369420
Number of successful extensions: 941
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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