Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0142
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30301| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   6e-22
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    30   1.8  
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)                  28   5.4  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  28   7.1  
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)          28   7.1  
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)      27   9.4  

>SB_30301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score =  101 bits (241), Expect = 6e-22
 Identities = 46/68 (67%), Positives = 56/68 (82%)
 Frame = +1

Query: 52  PDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHPDFLKQYGDFENGIPVHDT 231
           PD RQ  KV+HKLS IL LT+CAVI+GA+ W++IEDFG    ++LK+YGDF+NGIPV DT
Sbjct: 3   PDIRQQGKVKHKLSAILFLTVCAVIAGADEWQEIEDFGHERLEWLKKYGDFDNGIPVDDT 62

Query: 232 IARVVSCI 255
           IARVVS I
Sbjct: 63  IARVVSNI 70



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = +3

Query: 267 FHESFINWMLDYHSSDDKDVIAIXGKIHRHSYDKSRRKGAIHV 395
           F + FI WM + H   D ++IAI GK  R S+DK +RKGAIH+
Sbjct: 75  FEKMFIEWMQECHEITDGEIIAIDGKTIRGSFDKGKRKGAIHM 117


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/50 (30%), Positives = 32/50 (64%)
 Frame = +3

Query: 417 HSLVIGQIKTDKKSNEITAIPELLNMLDIKGKSSKPMRWVGQKDIAEKIQ 566
           H+L   Q++ + ++NEI AI E+LN  + + K  + +R + Q ++ +K++
Sbjct: 531 HTLECAQLENELRTNEINAISEVLN--EFEQKKGEALRQL-QAELKDKLK 577


>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 97   ILLLTICAVISGAEGWEDIEDFGETHPD-FLKQYGDFENGIPVHDTIARV 243
            ILL  IC++     GW+ +   G+T P+  L +   + N +  H T A +
Sbjct: 2239 ILLRNICSLTPPKTGWDALPAAGDTSPEAHLARIKYYRNNLYAHATHASI 2288


>SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)
          Length = 1032

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 222 SRYHCQSCILYCPAKFHESFINWMLDYHSSDDKDVIAIXGKIHRHSYDKSRRKGAIH 392
           S   C +C L+C   F       +   H S+ K + A+  K  + +++K R +G  H
Sbjct: 491 SEKKCHAC-LFCGKSFTCKMARHIKRSHGSETKVMAAVTSKDPQKAFEKLRLEGDFH 546


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 321  DVIAIXGKIHRHSYDKSRRKGAIHVISAFSTMHSLVIGQIKTDKKSNEI 467
            D+ +I G +HR   DK+ R+   H+     ++  L   ++ T +KS+++
Sbjct: 985  DISSITGSVHRPDLDKATRQ--FHMSLGAGSISPLTESEVGTLRKSDQV 1031


>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
          Length = 357

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 103 LLTICAVISGAEGWEDIEDFGETHPDFLKQYGD 201
           LLT C    G EG EDI+ F E   D     G+
Sbjct: 4   LLTYCFEEPGTEGGEDIKGFSELKSDIPNHEGN 36


>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
          Length = 851

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 220 QEYHFQNHHIASKNRDVFPQNPLYLPSLL 134
           + +H   HH    +RD+   NPL  P+LL
Sbjct: 811 RNFHEMPHHYGEASRDITRFNPLRKPNLL 839


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,625,610
Number of Sequences: 59808
Number of extensions: 441160
Number of successful extensions: 1070
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)