Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0142
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical pr... 31 0.51
AL023835-11|CAA19495.1| 335|Caenorhabditis elegans Hypothetical... 31 0.67
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z83116-6|CAB05565.2| 302|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp (s... 28 6.2
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 27 8.2
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 27 8.2
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 27 8.2
>Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical
protein F54B11.6 protein.
Length = 183
Score = 31.5 bits (68), Expect = 0.51
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 288 WMLDYHSSDDKDVIAIXGKIHRHSYDKSRR 377
W+ DYH S +K ++A+ K+H+ + R
Sbjct: 44 WLTDYHDSREKSLVALTEKLHQEFMEDQER 73
>AL023835-11|CAA19495.1| 335|Caenorhabditis elegans Hypothetical
protein Y37A1B.12 protein.
Length = 335
Score = 31.1 bits (67), Expect = 0.67
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 5 RTKWNLKN*WNIFLL 49
RT WNLKN WN+F L
Sbjct: 24 RTNWNLKNNWNLFFL 38
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 333 IXGKIHRHSYDKSRRKGAIHVISAFSTMHSL---VIGQIKTDKKSNEITAIPELLNMLDI 503
+ G +++ ++ + + +HV+ + H L V I T+ K+ E + LN+ D
Sbjct: 269 VTGLLNQETHQQLAERKGLHVVEMSPSRHFLPQIVASPISTELKTEETLEALDRLNLDDF 328
Query: 504 KGKSSKPMR 530
G+ P+R
Sbjct: 329 YGEGRYPLR 337
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 333 IXGKIHRHSYDKSRRKGAIHVISAFSTMHSL---VIGQIKTDKKSNEITAIPELLNMLDI 503
+ G +++ ++ + + +HV+ + H L V I T+ K+ E + LN+ D
Sbjct: 269 VTGLLNQETHQQLAERKGLHVVEMSPSRHFLPQIVASPISTELKTEETLEALDRLNLDDF 328
Query: 504 KGKSSKPMR 530
G+ P+R
Sbjct: 329 YGEGRYPLR 337
>Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical
protein Y41E3.18 protein.
Length = 510
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 577 PPCFCIFSAISFWPTHR 527
PPC CI +FWP R
Sbjct: 163 PPCCCIIQRSAFWPPRR 179
>Z83116-6|CAB05565.2| 302|Caenorhabditis elegans Hypothetical
protein M01B2.7 protein.
Length = 302
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 241 VVSCIVLRNFMRALLTGCLTTILQMIKTSSQLXEKYTG 354
V C+V+ +M L G LT IL M ++ +++ + Y G
Sbjct: 203 VTVCLVVCGWMTTDLIGALTVILPMDRSVARMVQLYCG 240
>AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 17 protein.
Length = 567
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 264 KFHESFINWMLDYHSSDDKDVIAIXGKIHRHSYDKSRRKGAI 389
+FH + + L YH DDK+ + + G ++ R G I
Sbjct: 356 RFHTGHVPYCLKYHPDDDKNHMFLVGMQNKKIIQWDSRSGEI 397
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 366 KSRRKGAIHVISAFSTMHSLVIGQIKTDKKSNE-ITAIPELLNMLDIKG 509
+ R G+ + + S H+L+I +IKT +++ E + +LN++D+ G
Sbjct: 188 QERSTGSTAMNAESSRSHALLIIRIKTQERTGELVKERSSILNLVDLAG 236
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 366 KSRRKGAIHVISAFSTMHSLVIGQIKTDKKSNE-ITAIPELLNMLDIKG 509
+ R G+ + + S H+L+I +IKT +++ E + +LN++D+ G
Sbjct: 188 QERSTGSTAMNAESSRSHALLIIRIKTQERTGELVKERSSILNLVDLAG 236
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 366 KSRRKGAIHVISAFSTMHSLVIGQIKTDKKSNE-ITAIPELLNMLDIKG 509
+ R G+ + + S H+L+I +IKT +++ E + +LN++D+ G
Sbjct: 186 QERSTGSTAMNAESSRSHALLIIRIKTQERTGELVKERSSILNLVDLAG 234
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,019
Number of Sequences: 27780
Number of extensions: 344573
Number of successful extensions: 970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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