Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0142
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.45 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 210 WYSCSRYHCQSCILYCPAKF 269
           W SCS +  Q    YCP +F
Sbjct: 416 WLSCSSFFQQFFHCYCPVRF 435


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 438 IKTDKKSNEITAIPELLNMLDI 503
           + TDKKS    A+PEL + L+I
Sbjct: 304 VVTDKKSKVNFALPELQHNLNI 325


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 228 IVNRNTIFKITILLQKIGMCFPKILYI 148
           ++  NTI     L  K+    PK+ YI
Sbjct: 265 VLGTNTILTFMTLASKVENSLPKVSYI 291


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 552 QYLSGQPIASVLMI 511
           Q +SG P+ASV M+
Sbjct: 583 QVISGNPVASVNMV 596


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -1

Query: 214 YHFQNHHIASKN 179
           YH  NHH+   N
Sbjct: 274 YHLDNHHVHHAN 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,997
Number of Sequences: 438
Number of extensions: 4090
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)