Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0142
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64730.1 68418.m08140 transducin family protein / WD-40 repea...    34   0.067
At5g40600.1 68418.m04928 hypothetical protein                          33   0.20 
At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 fam...    31   0.82 
At3g18710.1 68416.m02376 U-box domain-containing protein similar...    28   4.4  
At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar t...    28   5.8  
At3g24160.1 68416.m03033 expressed protein identical to cDNA put...    28   5.8  

>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to Will die slowly protein (SP:Q9V3J8) [Fruit
           fly] {Drosophila m.]
          Length = 299

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 199 DFENGIPVHDTIARVVSCIVLRNFMRALLTGCLTTILQMI-KTSSQLXEKYTG 354
           D   G  + D + + V+CI + N    +L GCL + L+++ +T+ +L + Y G
Sbjct: 172 DMRIGREMSDNLGQPVNCISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKG 224


>At5g40600.1 68418.m04928 hypothetical protein
          Length = 306

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -1

Query: 355 CRCIFPXIAMTSLSSEEW*SSIQLIKLS*NFAGQYRIQLWQWYREQEYHFQNHHIASK 182
           C C  P  AM+  ++EE   S++  +   +F G YR Q+ +   ++E    ++H+ +K
Sbjct: 69  CFCYIPESAMSKRAAEEMTPSLESNRTGPDFFGYYRAQVEELLSQEEKIPHHNHVDAK 126


>At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 747

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 292 CLTTILQMIKTSSQLXEKYTGILMTRVAVRERFMSLVRSQQCTVWSSD 435
           CL TIL+ IKTS +  E   G+L  +++ R  F  L +    T  S D
Sbjct: 24  CLKTILREIKTSQKRSES-QGVLKRKLSGRRNFSGLTKRYSRTFSSRD 70


>At3g18710.1 68416.m02376 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 415

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
 Frame = +1

Query: 67  AWKVEHKLSDILLL-TICAVISGAEGWEDIEDFGETHPDFLKQYGDFENGIPVHDTIARV 243
           A K   K+ DILL  T+  V    +  + +E         L+  GD +NG  V   + ++
Sbjct: 273 AAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKREGRLEICGD-DNGRCVEGVVKKL 331

Query: 244 VSCIVLRNFMRALLTGCLTTILQMIKTSSQLXEKYTGILMTRVAVRERFMSLVR 405
           +            +  CL  + +  KT  +  E+  G+    V ++    ++VR
Sbjct: 332 LKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVR 385


>At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar to
           L-ascorbate oxidase from {Nicotiana tabacum} SP|Q40588,
           {Cucurbita pepo var. melopepo} SP|P37064; contains Pfam
           profile PF00394: Multicopper oxidase; supported by cDNA
           gi_15215753_gb_AY050406.1_; A false intron was added
           between exons 4 and 5 to circumvent the single
           nucleotide insertion in this BAC which, otherwise,
           causes a frameshift.
          Length = 571

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 507 GKSSKPMRWVGQKDI 551
           G SSKPMRW+G+  I
Sbjct: 173 GLSSKPMRWIGEAQI 187


>At3g24160.1 68416.m03033 expressed protein identical to cDNA
           putative type 1 membrane protein (PMP)GI:4206764
          Length = 364

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +3

Query: 381 GAIHVISAFSTMHSLVIGQIKTDKKSNEITAIPELLNMLDIKGKSSKPMRWVGQKDIAEK 560
           GA  ++   S  HS +   I++  KS+   A  EL +   +    ++P   V  KDI + 
Sbjct: 98  GADDMLLETSPSHSFLGNAIRSSIKSDSYKADTELPDNEVVVVSVNEPSSDVTDKDINDF 157

Query: 561 IQKQGGDYLFAVKGNQGRLN 620
               GG Y+   + + G L+
Sbjct: 158 ASWLGGSYVAGAEPSSGLLS 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,768
Number of Sequences: 28952
Number of extensions: 315427
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)