Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0139
(682 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9UNL2 Cluster: Translocon-associated protein subunit g... 88 2e-16
UniRef50_Q29330 Cluster: Translocon associated protein gamma cha... 83 8e-15
UniRef50_Q95XS1 Cluster: Putative uncharacterized protein; n=2; ... 64 2e-09
UniRef50_Q5D974 Cluster: SJCHGC01752 protein; n=2; Schistosoma j... 53 7e-06
UniRef50_Q55GT5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.23
UniRef50_A2EK58 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_A5FMD4 Cluster: PKD domain containing protein precursor... 33 6.4
UniRef50_Q9AZR0 Cluster: Integrase; n=2; root|Rep: Integrase - L... 33 6.4
UniRef50_A6DKA4 Cluster: Zinc carboxypeptidase-related protein; ... 29 7.3
UniRef50_UPI0000DB7C9B Cluster: PREDICTED: similar to CG31344-PA... 33 8.5
UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n... 33 8.5
UniRef50_A4CI44 Cluster: Putative uncharacterized protein; n=1; ... 33 8.5
>UniRef50_Q9UNL2 Cluster: Translocon-associated protein subunit
gamma; n=36; Eumetazoa|Rep: Translocon-associated
protein subunit gamma - Homo sapiens (Human)
Length = 185
Score = 88.2 bits (209), Expect = 2e-16
Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 RVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--AD 429
R+ +++ + + + ++T ST+L+A AY+N KF LKH ++RKL AD
Sbjct: 49 RIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEAD 108
Query: 430 DKKMSRKEKDERILWKKNEVADYEAT 507
++KMSRKEKDERILWKKNEVADYEAT
Sbjct: 109 NRKMSRKEKDERILWKKNEVADYEAT 134
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +2
Query: 113 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLF 253
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLY 47
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +3
Query: 435 KNEQKRKGRKNLVEKE*GGRL*SYQYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSL 614
K +K K + L +K + +SIFYNN LFL +VI++SF+IL+ F PTVNYI+S+
Sbjct: 111 KMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSI 170
Query: 615 TAASG 629
+A+SG
Sbjct: 171 SASSG 175
>UniRef50_Q29330 Cluster: Translocon associated protein gamma chain;
n=2; Laurasiatheria|Rep: Translocon associated protein
gamma chain - Sus scrofa (Pig)
Length = 77
Score = 82.6 bits (195), Expect = 8e-15
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Frame = +1
Query: 274 ISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSR 447
I +A+++ ++ T ST+L+A AY+N KF LKH ++RKL AD++KMSR
Sbjct: 1 IQSAVLYSVM-TLVSTYLVAXAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSR 59
Query: 448 KEKDERILWKKNEVADYE 501
KEKDERILWKKNEVADYE
Sbjct: 60 KEKDERILWKKNEVADYE 77
>UniRef50_Q95XS1 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 178
Score = 64.5 bits (150), Expect = 2e-09
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +1
Query: 259 VHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKK 438
VH +EI +++ + L + +LL+LA +N K LKH +S + A DKK
Sbjct: 45 VHQMEIQDSLVVWGLSAVGTAYLLSLACKNQKCLLKHQIVMKRGSAVEREISGQYAADKK 104
Query: 439 MSRKEKDERILWKKNEVADYEAT 507
M+ KEK+ER L++KNEVAD E+T
Sbjct: 105 MTVKEKEERALFRKNEVADTEST 127
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +2
Query: 140 TKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLF*G 259
TKEEELLL +S STK + FY NA I+S P++LF G
Sbjct: 5 TKEEELLLSSYSATSSTKGNLFFYLNALIISIAPLYLFYG 44
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 447 KRKGRKNLVEKE*GGRL*SYQYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAAS 626
K K + L K S S+FY N+L+LTI+++S+F++L P N ++S ++
Sbjct: 108 KEKEERALFRKNEVADTESTYLSVFYTNSLYLTIMLVSAFFLLANVAPVFNLLISTIGSA 167
Query: 627 G 629
G
Sbjct: 168 G 168
>UniRef50_Q5D974 Cluster: SJCHGC01752 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC01752 protein - Schistosoma
japonicum (Blood fluke)
Length = 173
Score = 52.8 bits (121), Expect = 7e-06
Identities = 24/83 (28%), Positives = 47/83 (56%)
Frame = +1
Query: 259 VHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKK 438
VH + + + F +++ AST+L++LAY+N+K L ++ + DKK
Sbjct: 46 VHKMPLVANSVLFAIISLASTFLMSLAYKNSKAPLMERIAIRRTEAITKEVNSEACKDKK 105
Query: 439 MSRKEKDERILWKKNEVADYEAT 507
+S+K +++ + + +VADYE+T
Sbjct: 106 LSKKNREDIVRERTKKVADYEST 128
Score = 47.6 bits (108), Expect = 3e-04
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +2
Query: 140 TKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLF*G 259
TKE+E LL+++S+ S S L Y NA ++S+IPIWLF G
Sbjct: 6 TKEDERLLEEYSQAASKSSEKLVYVNAIMISSIPIWLFFG 45
>UniRef50_Q55GT5 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 170
Score = 37.9 bits (84), Expect = 0.23
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 513 SIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASG 629
SI YNNA+FL V + SF I + NYI+S++ +G
Sbjct: 121 SIMYNNAVFLICVSIFSFIIFKNVPLVYNYIISISLGAG 159
>UniRef50_A2EK58 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 341
Score = 33.9 bits (74), Expect = 3.7
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 653 PVESRARSP-RCSRERHNVINCRCECTQNVETAQDDNSQEKCV 528
PV S SP R R RH V+ CTQ V + DN QE V
Sbjct: 265 PVNSDKTSPPRKRRVRHRVVKHESNCTQPVNGSSTDNHQENTV 307
>UniRef50_A5FMD4 Cluster: PKD domain containing protein precursor;
n=1; Flavobacterium johnsoniae UW101|Rep: PKD domain
containing protein precursor - Flavobacterium johnsoniae
UW101
Length = 1290
Score = 33.1 bits (72), Expect = 6.4
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 573 LRTFTPTVN--YIVSLTAASGTSCSTLHRNQVKME 671
L TFTP V+ Y++ L A+S TSC TL + ++
Sbjct: 677 LYTFTPQVSGEYVIELVASSATSCKTLFTKNITID 711
>UniRef50_Q9AZR0 Cluster: Integrase; n=2; root|Rep: Integrase -
Lactococcus phage bIL309
Length = 377
Score = 33.1 bits (72), Expect = 6.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -2
Query: 525 CRKLSIGSFIICHLILFPQDSFVLFFSAHFFIISKLPGHFTGNSILPAHSNTVLQLE 355
C+KL I CH + S +L+ + +SK GH + N + +S+ + +LE
Sbjct: 304 CKKLGFKKIITCHGLRHTHASTMLYKGINILYVSKRLGHSSLNVTMSVYSHILKELE 360
>UniRef50_A6DKA4 Cluster: Zinc carboxypeptidase-related protein;
n=1; Lentisphaera araneosa HTCC2155|Rep: Zinc
carboxypeptidase-related protein - Lentisphaera araneosa
HTCC2155
Length = 343
Score = 29.5 bits (63), Expect(2) = 7.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 557 EQFLHSAYIHTYS*LHCVSHGCIWDFLLYSPQEPSEDGSF 676
E F + AY H + HG +WD+LL ++ S G F
Sbjct: 224 EGFPYHAYKFEPQIRHYLIHGDLWDYLLLEHEKSSNSGIF 263
Score = 22.2 bits (45), Expect(2) = 7.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 509 ILNFLQ*RTFPDYCHLEQFLHSAY 580
++NF++ TF C + LHS +
Sbjct: 169 LINFVKKHTFESKCTISLDLHSGF 192
>UniRef50_UPI0000DB7C9B Cluster: PREDICTED: similar to CG31344-PA,
partial; n=1; Apis mellifera|Rep: PREDICTED: similar to
CG31344-PA, partial - Apis mellifera
Length = 329
Score = 32.7 bits (71), Expect = 8.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 516 IFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASGTSCSTLHR 653
+FYNNA + I L L T P++ ++ T S T C+ HR
Sbjct: 42 MFYNNAFTMMIAKLCGLLSLFTI-PSIKNVLMFTGQSSTLCAAFHR 86
>UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: TPR Domain containing
protein - Tetrahymena thermophila SB210
Length = 3418
Score = 32.7 bits (71), Expect = 8.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 111 KCLERTTKLLQKKKSYC-CKILAGMCPQNRLLSFTGTLLLFQQF 239
K LE T K L+ K SY CK+L G C N T T+ + +F
Sbjct: 2172 KVLEYTQKALELKPSYDECKVLLGFCYLNIQKDLTKTIEFYNEF 2215
>UniRef50_A4CI44 Cluster: Putative uncharacterized protein; n=1;
Robiginitalea biformata HTCC2501|Rep: Putative
uncharacterized protein - Robiginitalea biformata
HTCC2501
Length = 4484
Score = 32.7 bits (71), Expect = 8.5
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 501 SYQYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASGTSC 638
SYQYS+ Y +A TI S F FT I S+T + G +C
Sbjct: 3856 SYQYSLNYYDAAGATIAFSSGFQASPVFTGLGAGIYSITVSDGWNC 3901
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,300,756
Number of Sequences: 1657284
Number of extensions: 12211245
Number of successful extensions: 31125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 29998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31113
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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