Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0139
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.1
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 1.9
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 27 2.5
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 3.3
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 4.4
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 4.4
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 4.4
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 5.8
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2... 25 7.7
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 25 7.7
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 5 TRARKLTYRILRVVLPLNSTQLLFVFVKVKVTYLVKMSGKNNKAFTKEEELLLQDFS 175
T A LT+ RVV +S+Q +F + L K + + EE +L DFS
Sbjct: 2107 THADTLTFDFPRVVFSTDSSQYYDIFTIITDLLLYKEPAQKQRNQRLEEIMLAADFS 2163
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 80 FVKVKVTYLVKMSGKNN-KAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAI 238
F++VK+ + + G+NN K + K +LL Q + S++++ GNA + A+
Sbjct: 272 FLQVKILQFLSILGQNNPKIYDKMSDLLAQVCTNTDSSRNA----GNAILYQAV 321
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -2
Query: 498 IICHLILFPQDSFVLFFSAHFFIISKLPGHFTGNSILPAHSN 373
++ H+ F +D +++ S+ F ++ + TG+SI+P N
Sbjct: 250 VMLHISRFAED-LIIYSSSEFGFVTLSDAYSTGSSIMPQKKN 290
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 519 KLSIGSFIICHLILFPQDSFVLFFSAHFFIISKLPGHFTGNSILPAH 379
KL G + CH+ F FV A F+++ + + N I P++
Sbjct: 184 KLKPGESVGCHINSFLDSMFVKEQKAAFYVLQGISPDISSNIIKPSY 230
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 579 TFTPTVNYIVSLTAASGTSCSTLHR 653
T P + ++SL AASGT S LH+
Sbjct: 4 TSIPIASTLLSLLAASGTLASPLHK 28
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -2
Query: 357 ELSVTVGKSQQPGASCRY*DKPNNCGAYFQ*MYPQNNQIGIAETIKAFP*KRADDFVDTF 178
E+ + K+ SC Y PN+ + + Y N+I I++ K F KRA +DT
Sbjct: 17 EIEAEIHKNLHISKSCSYQKVPNSHKEFTKFCYEVYNEIKISD--KEFKEKRA--ALDTL 72
Query: 177 RL 172
RL
Sbjct: 73 RL 74
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 579 TFTPTVNYIVSLTAASGTSCSTLHR 653
T P + ++SL AASGT S LH+
Sbjct: 4 TSIPIASTLLSLLAASGTLASPLHK 28
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 623 CSRERHNVINCRCECTQNVETAQDDNSQEK 534
C + INCRC ++ E+A D S K
Sbjct: 29 CVSNENGCINCRCSPSEPHESANVDESVNK 58
>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 178 ECVHKIVCSLLRERFYCFSNSNLVVLRVHSLEISTAIIWFILVTAAS 318
+C + + C + F +NL + + +ST IWF+ AS
Sbjct: 84 QCTYYLACFHFLSEWLLFRTTNLGPGLLSPIVVSTVSIWFMAKEKAS 130
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 531 RYCRKLSIGSFIICHLILFPQDSFVLFFSAHFFIISKLPGHFT 403
R CRKL + IC +IL + L+ + F + K FT
Sbjct: 3 RKCRKLLLKGIPICGVILLILWGYSLYNTLRFMVPGKATEPFT 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,099
Number of Sequences: 5004
Number of extensions: 53670
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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