Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0139
(682 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence recepto... 88 2e-17
BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence recepto... 88 2e-17
AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated p... 88 2e-17
AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein. 88 2e-17
D79999-1|BAA11494.2| 1725|Homo sapiens KIAA0177 protein protein. 30 6.6
AF158255-1|AAD47250.1| 1724|Homo sapiens vault protein protein. 30 6.6
AF057160-1|AAC62491.1| 1724|Homo sapiens putative poly(ADP-ribos... 30 6.6
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 30 8.8
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 8.8
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 8.8
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 8.8
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 8.8
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 8.8
>BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 88.2 bits (209), Expect = 2e-17
Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 RVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--AD 429
R+ +++ + + + ++T ST+L+A AY+N KF LKH ++RKL AD
Sbjct: 49 RIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEAD 108
Query: 430 DKKMSRKEKDERILWKKNEVADYEAT 507
++KMSRKEKDERILWKKNEVADYEAT
Sbjct: 109 NRKMSRKEKDERILWKKNEVADYEAT 134
Score = 71.3 bits (167), Expect = 3e-12
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +2
Query: 113 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLF 253
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLY 47
Score = 64.9 bits (151), Expect = 3e-10
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +3
Query: 435 KNEQKRKGRKNLVEKE*GGRL*SYQYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSL 614
K +K K + L +K + +SIFYNN LFL +VI++SF+IL+ F PTVNYI+S+
Sbjct: 111 KMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSI 170
Query: 615 TAASG 629
+A+SG
Sbjct: 171 SASSG 175
>BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 88.2 bits (209), Expect = 2e-17
Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 RVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--AD 429
R+ +++ + + + ++T ST+L+A AY+N KF LKH ++RKL AD
Sbjct: 49 RIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEAD 108
Query: 430 DKKMSRKEKDERILWKKNEVADYEAT 507
++KMSRKEKDERILWKKNEVADYEAT
Sbjct: 109 NRKMSRKEKDERILWKKNEVADYEAT 134
Score = 71.3 bits (167), Expect = 3e-12
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +2
Query: 113 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLF 253
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLY 47
Score = 64.9 bits (151), Expect = 3e-10
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +3
Query: 435 KNEQKRKGRKNLVEKE*GGRL*SYQYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSL 614
K +K K + L +K + +SIFYNN LFL +VI++SF+IL+ F PTVNYI+S+
Sbjct: 111 KMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSI 170
Query: 615 TAASG 629
+A+SG
Sbjct: 171 SASSG 175
>AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated
protein gamma subunit protein.
Length = 185
Score = 88.2 bits (209), Expect = 2e-17
Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 RVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--AD 429
R+ +++ + + + ++T ST+L+A AY+N KF LKH ++RKL AD
Sbjct: 49 RIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEAD 108
Query: 430 DKKMSRKEKDERILWKKNEVADYEAT 507
++KMSRKEKDERILWKKNEVADYEAT
Sbjct: 109 NRKMSRKEKDERILWKKNEVADYEAT 134
Score = 71.3 bits (167), Expect = 3e-12
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +2
Query: 113 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLF 253
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLY 47
Score = 64.9 bits (151), Expect = 3e-10
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +3
Query: 435 KNEQKRKGRKNLVEKE*GGRL*SYQYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSL 614
K +K K + L +K + +SIFYNN LFL +VI++SF+IL+ F PTVNYI+S+
Sbjct: 111 KMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSI 170
Query: 615 TAASG 629
+A+SG
Sbjct: 171 SASSG 175
>AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein.
Length = 185
Score = 88.2 bits (209), Expect = 2e-17
Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 RVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--AD 429
R+ +++ + + + ++T ST+L+A AY+N KF LKH ++RKL AD
Sbjct: 49 RIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEAD 108
Query: 430 DKKMSRKEKDERILWKKNEVADYEAT 507
++KMSRKEKDERILWKKNEVADYEAT
Sbjct: 109 NRKMSRKEKDERILWKKNEVADYEAT 134
Score = 71.3 bits (167), Expect = 3e-12
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +2
Query: 113 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLF 253
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLY 47
Score = 64.9 bits (151), Expect = 3e-10
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +3
Query: 435 KNEQKRKGRKNLVEKE*GGRL*SYQYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSL 614
K +K K + L +K + +SIFYNN LFL +VI++SF+IL+ F PTVNYI+S+
Sbjct: 111 KMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSI 170
Query: 615 TAASG 629
+A+SG
Sbjct: 171 SASSG 175
>D79999-1|BAA11494.2| 1725|Homo sapiens KIAA0177 protein protein.
Length = 1725
Score = 30.3 bits (65), Expect = 6.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 133 SFYKRRRVIVARF*PECVHKIVCSLLRERFYC 228
S ++ R++V F P C +C+L++E+ +C
Sbjct: 1078 SLFRNDRLLVYGFIPHCTQATLCALIQEKEFC 1109
>AF158255-1|AAD47250.1| 1724|Homo sapiens vault protein protein.
Length = 1724
Score = 30.3 bits (65), Expect = 6.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 133 SFYKRRRVIVARF*PECVHKIVCSLLRERFYC 228
S ++ R++V F P C +C+L++E+ +C
Sbjct: 1077 SLFRNDRLLVYGFIPHCTQATLCALIQEKEFC 1108
>AF057160-1|AAC62491.1| 1724|Homo sapiens putative poly(ADP-ribosyl)
transferase protein.
Length = 1724
Score = 30.3 bits (65), Expect = 6.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 133 SFYKRRRVIVARF*PECVHKIVCSLLRERFYC 228
S ++ R++V F P C +C+L++E+ +C
Sbjct: 1077 SLFRNDRLLVYGFIPHCTQATLCALIQEKEFC 1108
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 507 QYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASGTSCSTLHRNQV 662
+YSI+ NN L+ T + + +ILR +P Y + + + +C + Q+
Sbjct: 3052 EYSIYVNNKLYKTGMNVPGSFILRDLSPFTIYDIQVEVCTIYACVKSNGTQI 3103
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 507 QYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASGTSCSTLHRNQV 662
+YSI+ NN L+ T + + +ILR +P Y + + + +C + Q+
Sbjct: 3052 EYSIYVNNKLYKTGMNVPGSFILRDLSPFTIYDIQVEVCTIYACVKSNGTQI 3103
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 507 QYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASGTSCSTLHRNQV 662
+YSI+ NN L+ T + + +ILR +P Y + + + +C + Q+
Sbjct: 3052 EYSIYVNNKLYKTGMNVPGSFILRDLSPFTIYDIQVEVCTIYACVKSNGTQI 3103
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 507 QYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASGTSCSTLHRNQV 662
+YSI+ NN L+ T + + +ILR +P Y + + + +C + Q+
Sbjct: 3052 EYSIYVNNKLYKTGMNVPGSFILRDLSPFTIYDIQVEVCTIYACVKSNGTQI 3103
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 507 QYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASGTSCSTLHRNQV 662
+YSI+ NN L+ T + + +ILR +P Y + + + +C + Q+
Sbjct: 3052 EYSIYVNNKLYKTGMNVPGSFILRDLSPFTIYDIQVEVCTIYACVKSNGTQI 3103
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 507 QYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASGTSCSTLHRNQV 662
+YSI+ NN L+ T + + +ILR +P Y + + + +C + Q+
Sbjct: 3052 EYSIYVNNKLYKTGMNVPGSFILRDLSPFTIYDIQVEVCTIYACVKSNGTQI 3103
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,722,858
Number of Sequences: 237096
Number of extensions: 1918035
Number of successful extensions: 3304
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3300
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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