Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0139
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical ...    64   7e-11
AL117195-20|CAB60768.1|  388|Caenorhabditis elegans Hypothetical...    28   5.4  
Z83112-1|CAB05538.1|  742|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    28   7.1  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF125964-3|ABA03110.1|  805|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    28   7.1  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    28   7.1  
AF047655-2|ABD63245.1|  805|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF025465-10|AAB71023.1|  805|Caenorhabditis elegans Hypothetical...    28   7.1  
AF016422-2|AAG24174.1|  805|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC024831-3|ABD63213.1|  805|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine re...    27   9.4  
AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical...    27   9.4  

>AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.2 protein.
          Length = 178

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 34/83 (40%), Positives = 50/83 (60%)
 Frame = +1

Query: 259 VHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKK 438
           VH +EI  +++ + L    + +LL+LA +N K  LKH             +S + A DKK
Sbjct: 45  VHQMEIQDSLVVWGLSAVGTAYLLSLACKNQKCLLKHQIVMKRGSAVEREISGQYAADKK 104

Query: 439 MSRKEKDERILWKKNEVADYEAT 507
           M+ KEK+ER L++KNEVAD E+T
Sbjct: 105 MTVKEKEERALFRKNEVADTEST 127



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = +2

Query: 140 TKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLF*G 259
           TKEEELLL  +S   STK +  FY NA I+S  P++LF G
Sbjct: 5   TKEEELLLSSYSATSSTKGNLFFYLNALIISIAPLYLFYG 44



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/61 (32%), Positives = 34/61 (55%)
 Frame = +3

Query: 447 KRKGRKNLVEKE*GGRL*SYQYSIFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAAS 626
           K K  + L  K       S   S+FY N+L+LTI+++S+F++L    P  N ++S   ++
Sbjct: 108 KEKEERALFRKNEVADTESTYLSVFYTNSLYLTIMLVSAFFLLANVAPVFNLLISTIGSA 167

Query: 627 G 629
           G
Sbjct: 168 G 168


>AL117195-20|CAB60768.1|  388|Caenorhabditis elegans Hypothetical
           protein Y57A10A.27 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 80  FVKVKVTYLVKMSGKNNKAFTKEEELLLQDFSRNVSTKSSAL 205
           F+KV +T L +    + K+  K  ELL++   R  STK+SAL
Sbjct: 10  FLKVDLTRLAEDDETHQKSTKKHTELLIELIDRK-STKASAL 50


>Z83112-1|CAB05538.1|  742|Caenorhabditis elegans Hypothetical
           protein K02B7.1 protein.
          Length = 742

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 668 HLHLVPVESRARSPRCSRERHNVINCRCECTQNVETAQDDNSQEKCVIV 522
           H H V  +S  R    +     ++     C QN+E  + ++ QEKC ++
Sbjct: 161 HFHNVSQDSILRKLLLNDSHLTLVEVCNLCAQNIELCKCEDMQEKCQLI 209


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 638  ARSPRCSRERHNVINCRCECTQNVETAQDDNSQEKCVIVEN 516
            A +P+CS E     N  CEC +N   AQ D  +E    VEN
Sbjct: 948  AVNPQCSEE-----NGECECKENYIGAQCDRCKENHGDVEN 983


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 638  ARSPRCSRERHNVINCRCECTQNVETAQDDNSQEKCVIVEN 516
            A +P+CS E     N  CEC +N   AQ D  +E    VEN
Sbjct: 948  AVNPQCSEE-----NGECECKENYIGAQCDRCKENHGDVEN 983


>AF125964-3|ABA03110.1|  805|Caenorhabditis elegans Hypothetical
           protein W03G1.4 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 668 HLHLVPVESRARSPRCSRERHNVINCRCECTQNVETAQDDNSQEKCVIV 522
           H H V  +S  R    +     ++     C QN+E  + ++ QEKC ++
Sbjct: 161 HFHNVSQDSILRKLLLNDSHLTLVEVCNLCAQNIELCKCEDMQEKCQLI 209


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 638  ARSPRCSRERHNVINCRCECTQNVETAQDDNSQEKCVIVEN 516
            A +P+CS E     N  CEC +N   AQ D  +E    VEN
Sbjct: 948  AVNPQCSEE-----NGECECKENYIGAQCDRCKENHGDVEN 983


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = -3

Query: 371 RCFNWNLVLR*ARASNQVLAAVTRINQIIAVLISNECTLRTTKLELLKQ*KRSRKREQTI 192
           R F WN  +  A  +NQVL+  TRI  + +V+I +   + +   ELL     +     TI
Sbjct: 193 RLFIWNNYV--AIHANQVLSRATRIALLDSVIIFSFSIIPSFIFELLPTLSFASVGPWTI 250

Query: 191 LWTHSG 174
           ++ H+G
Sbjct: 251 VFKHAG 256


>AF047655-2|ABD63245.1|  805|Caenorhabditis elegans Hypothetical
           protein C17B7.7 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 668 HLHLVPVESRARSPRCSRERHNVINCRCECTQNVETAQDDNSQEKCVIV 522
           H H V  +S  R    +     ++     C QN+E  + ++ QEKC ++
Sbjct: 161 HFHNVSQDSILRKLLLNDSHLTLVEVCNLCAQNIELCKCEDMQEKCQLI 209


>AF025465-10|AAB71023.1|  805|Caenorhabditis elegans Hypothetical
           protein K02E7.3 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 668 HLHLVPVESRARSPRCSRERHNVINCRCECTQNVETAQDDNSQEKCVIV 522
           H H V  +S  R    +     ++     C QN+E  + ++ QEKC ++
Sbjct: 161 HFHNVSQDSILRKLLLNDSHLTLVEVCNLCAQNIELCKCEDMQEKCQLI 209


>AF016422-2|AAG24174.1|  805|Caenorhabditis elegans Hypothetical
           protein R09E12.6 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 668 HLHLVPVESRARSPRCSRERHNVINCRCECTQNVETAQDDNSQEKCVIV 522
           H H V  +S  R    +     ++     C QN+E  + ++ QEKC ++
Sbjct: 161 HFHNVSQDSILRKLLLNDSHLTLVEVCNLCAQNIELCKCEDMQEKCQLI 209


>AC024831-3|ABD63213.1|  805|Caenorhabditis elegans Hypothetical
           protein Y55F3C.6 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 668 HLHLVPVESRARSPRCSRERHNVINCRCECTQNVETAQDDNSQEKCVIV 522
           H H V  +S  R    +     ++     C QN+E  + ++ QEKC ++
Sbjct: 161 HFHNVSQDSILRKLLLNDSHLTLVEVCNLCAQNIELCKCEDMQEKCQLI 209


>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 44  VLPLNSTQLLFVFVKVKVTYLVKMSGKNNKA--FTKEEELLLQDFSRNVS 187
           +L +NS  L+F +  VK+  ++K   +N+ +  +  EE ++   FS  +S
Sbjct: 188 LLAINSVNLVFNYFLVKINTILKEKWRNSLSTRYQMEENIITTKFSTFIS 237


>AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein63 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 495 ICHLILFPQDSFVLFFSAHFFIISKLPGHFTGNSILPAHSNTVLQLELSVTVGKSQQ 325
           ICH     Q  F+ F ++   +I    G F  NS++ A    ++ L  +VT+ KS+Q
Sbjct: 142 ICHFRFDEQVQFLTFSNSRICMIVGWNGDFIKNSVIVA----IIMLLDTVTIMKSRQ 194


>AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical
           protein Y54G2A.27 protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 518 FLQ*RTFPDYCHLEQFLH---SAYIHTYS*LHCVSH 616
           +LQ    P  C L   +H   S+YI+ YS LH +SH
Sbjct: 63  YLQMLFRPSVCPLHPSIHLSSSSYIYIYSQLHMLSH 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,028
Number of Sequences: 27780
Number of extensions: 311076
Number of successful extensions: 884
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)