Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0139
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.2  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 205 LLRERFYCFSNSNLVVLRVHSLEISTAIIWFILVTAASTW 324
           L RE FYC +  N    R+    I   I W   V A + W
Sbjct: 308 LWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVEALAKW 347


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 41  VVLPLNSTQLLFVFVKVKVTYLV 109
           +VLPL +  LLF F+   V+ LV
Sbjct: 291 LVLPLIAKYLLFTFIMNTVSILV 313


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 516 IFYNNALFLTIVILSSFYILRTFTPTVNYIVSLTAASGTSCSTLHRNQ 659
           IF  N L LT +I     +++        IV++  ASG +   ++RN+
Sbjct: 111 IFDINLLGLTCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNR 158


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 157 IVARF*PECVHKIVCSLLRERFYCFSNSNLVVLRVHSLEISTA 285
           +V  F   C+H  V S+L    YC S  N  +  + S +   A
Sbjct: 30  LVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFA 72


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 157 IVARF*PECVHKIVCSLLRERFYCFSNSNLVVLRVHSLEISTA 285
           +V  F   C+H  V S+L    YC S  N  +  + S +   A
Sbjct: 478 LVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFA 520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,141
Number of Sequences: 438
Number of extensions: 4032
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)