Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0139
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01130.1 68418.m00017 hypothetical protein contains Pfam prof...    27   8.7  
At3g46920.1 68416.m05092 protein kinase family protein similar t...    27   8.7  

>At5g01130.1 68418.m00017 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 484

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 14  RKLTYRILRVVLPLNSTQLLFVFVKVKVTYLVKMSGKNNKAFTKEEELL--LQDF-SRNV 184
           RK    IL V    +   LLF F+ V + Y+V +SG N+ +F     L+   +D  +  V
Sbjct: 260 RKQDMEILYVECGEDFVDLLFTFLAVPLEYVVGISG-NSCSFVCIRNLIRSFKDLNAAEV 318

Query: 185 STKSSALFY 211
           ST  SA+ +
Sbjct: 319 STSKSAIHH 327


>At3g46920.1 68416.m05092 protein kinase family protein similar to
           MAP3K delta-1 protein kinase [Arabidopsis thaliana]
           GI:2253010; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 1171

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -1

Query: 502 LHNLPPHSFSTRXXXXXXXXXXFYHQQASWTFHGQQHPP 386
           +H  PPHSF                QQ  +T   + HPP
Sbjct: 281 VHADPPHSFQLETVSEKPIVGKMQQQQQGYTTPSEHHPP 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,069,861
Number of Sequences: 28952
Number of extensions: 276075
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)