Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0138
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    27   9.1  
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    27   9.1  
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    27   9.1  

>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
          xylosyltransferase protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 83 LRNVYILFNIAVITMYKTCKHINSTS 6
          L NVY+L+N A  T     KHI+S S
Sbjct: 21 LLNVYLLYNTAQHTQVGNSKHISSDS 46


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
          O-xylosyltransferase protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 83 LRNVYILFNIAVITMYKTCKHINSTS 6
          L NVY+L+N A  T     KHI+S S
Sbjct: 21 LLNVYLLYNTAQHTQVGNSKHISSDS 46


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
          protein 6 protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 83 LRNVYILFNIAVITMYKTCKHINSTS 6
          L NVY+L+N A  T     KHI+S S
Sbjct: 21 LLNVYLLYNTAQHTQVGNSKHISSDS 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,476
Number of Sequences: 27780
Number of extensions: 260527
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)