Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0138
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.0  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 16  FICLHVLYIVMTAILKSIYTFLNFVN 93
           F+C+ ++YI+M  I      + NF++
Sbjct: 402 FLCISLVYIIMLIIFIPRNIYENFIS 427


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 640  IKSKLTSFQTHIIRP 596
            + +++TSF  H++RP
Sbjct: 1312 VPARITSFGGHVVRP 1326


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 640  IKSKLTSFQTHIIRP 596
            + +++TSF  H++RP
Sbjct: 1308 VPARITSFGGHVVRP 1322


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 492 YCPNNYLTKMYTRIQQIIINY 430
           Y  NNY    Y ++Q   INY
Sbjct: 97  YNNNNYNNNNYKKLQYYNINY 117


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 492 YCPNNYLTKMYTRIQQIIINY 430
           Y  NNY    Y ++Q   INY
Sbjct: 97  YNNNNYNNNNYKKLQYYNINY 117


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 492 YCPNNYLTKMYTRIQQIIINY 430
           Y  NNY    Y ++Q   INY
Sbjct: 97  YNNNNYNNNNYKKLQYYNINY 117


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 492 YCPNNYLTKMYTRIQQIIINY 430
           Y  NNY    Y ++Q   INY
Sbjct: 97  YNNNNYNNNNYKKLQYYNINY 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,402
Number of Sequences: 438
Number of extensions: 3980
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)