Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0137
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 185 DSGCRSTSSSIPYEPRANSF*CVDTAGQEKFGGLRDG 295
           DS  R TSS+  Y+PR   +    T   E F  L+DG
Sbjct: 218 DSFQRLTSSTFVYDPRYTKY----TINDESF-SLQDG 249


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 365 PNWXRDLVRVCEGIPIV 415
           PNW  + V+ C+G+  V
Sbjct: 107 PNWSYNDVKYCDGLTSV 123


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 493 AVLRHSAKSNYNFEKPFLWLARKLIGDGN 579
           AV R +A   +++     W AR L+ DGN
Sbjct: 360 AVKRCNATGAFSWIGSDGWSARGLVSDGN 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,309
Number of Sequences: 438
Number of extensions: 4650
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)