Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0136
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.4  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    25   7.6  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   10.0 
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    25   10.0 

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +1

Query: 190  GDSKMTCWCVPMHSVKQF-LVXSCLLYEKNVPFSLIG----GNTTSCLALINCLYSEV 348
            G      W  PM  ++ F LV  CLL ++  P  L+G    G TT C  L  CL+ E+
Sbjct: 1161 GPLSKVVWTRPM--IRLFCLVWRCLLAKE--PVLLVGDTGCGKTTVCQILAECLHKEL 1214


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 112 ISRRIFLVGREDPLVESTKPC 50
           I R IFL  ++ PL  ST PC
Sbjct: 43  IPREIFLKLQDSPLYNSTTPC 63


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 263 NKHXXTKNCLTECIGTHQQVILESPDPASVL*SEMRLPFTFN 138
           N +    + LT     H++    SP  A+VL S + +P TFN
Sbjct: 328 NHYYYVGDPLTPGWSAHEETNRISPKDANVLPSIVSIPITFN 369


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 274 NVPFSLIGGNTTSCLALINCLYSEVIALTQNTLYYFLTV 390
           N P ++ G      LA  NC+  +    T  +L YF T+
Sbjct: 165 NYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLLYFATL 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,016
Number of Sequences: 5004
Number of extensions: 44669
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)