Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0136
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0239 + 13384451-13387124,13387234-13387631                       29   3.4  

>06_02_0239 + 13384451-13387124,13387234-13387631
          Length = 1023

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 274 NVPFSLIGGNTTSCLALINCLYSEVIALTQNTLYYFLTVSL 396
           N   +++ GN  +  ALINC   E+I L+QNT +  +  S+
Sbjct: 139 NASANILTGNIPA--ALINCTNLEIIDLSQNTFFGTIPASI 177



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 274 NVPFSLIGGNTTSCLALINCLYSEVIALTQNTLYYFLTVSL 396
           N+ F+ I GNT+  + L+NC   ++IA  +N +   L  S+
Sbjct: 332 NIGFNQIVGNTSVLVDLMNCTKLQLIAFDENLIEGILPDSI 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,817,976
Number of Sequences: 37544
Number of extensions: 256963
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)