Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0136
         (676 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   2.9  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   5.0  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   6.7  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 226  HSVKQFLVXSCLLYEKNVPFSLIGGNT 306
            ++  QFLV  C+ Y  N   +++GG T
Sbjct: 1190 NTTAQFLVFRCMKYFLNPNVTVLGGQT 1216


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 507 SAEHGNSNFFLSINKRMHFQE 445
           +A   NS+++   NKR+HF+E
Sbjct: 176 TAFRDNSSYYTIDNKRVHFKE 196


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 219 YAPTSHFGVSRSRFGALK*NAATVHVQPNP 130
           Y P  HF  +  RF     N+   H+ P P
Sbjct: 359 YQPLHHFSAASQRFMLRSCNSLGDHIPPLP 388


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,049
Number of Sequences: 2352
Number of extensions: 10689
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67741110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)