Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0136
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-1|CAB03820.1|  274|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    28   7.0  

>Z81458-1|CAB03820.1|  274|Caenorhabditis elegans Hypothetical
           protein C03E10.1 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 316 LALINCLYSEVIALTQNTLYYFL 384
           L +++ + S VI LTQ+ LYYF+
Sbjct: 52  LVIVSQVISSVICLTQDDLYYFM 74


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 100  SGEIFTG*IVRVRLNVNGSRISL*STEAGSGDSKMTCWCVPMHSVKQFLVXSCLLYEKNV 279
            +G+I  G  +R+       R+ +  T+A    S M    VP+HS  +F + +  +  KNV
Sbjct: 1887 NGDILIGEFIRIANQTTIRRLGMKGTKAIQRGSVML---VPLHSSIKFFLSTVDITAKNV 1943

Query: 280  P 282
            P
Sbjct: 1944 P 1944


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,464,017
Number of Sequences: 27780
Number of extensions: 246604
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)