Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0136
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 214 CVPMHSVKQFL-----VXSCLLYEKNVPFSLIGGNTTSCLALINCL 336
           CV  +SV + L     V + +     V   +IGG +  C A++ C+
Sbjct: 108 CVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCV 153


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 214 CVPMHSVKQFL-----VXSCLLYEKNVPFSLIGGNTTSCLALINCL 336
           CV  +SV + L     V + +     V   +IGG +  C A++ C+
Sbjct: 108 CVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCV 153


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 498 HGNSNFFLSINKRMHFQENY 439
           H N+N+    NK++++  NY
Sbjct: 313 HNNNNYNNYNNKKLYYNINY 332


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 310 KSYSLL*EKREHFSHTI 260
           KS +L  +KRE++SH +
Sbjct: 451 KSLNLAAQKREYYSHYV 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,741
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)