Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0135
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   5.5  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    25   7.3  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   7.3  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   9.6  

>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 180 NYNFLSALRSVSCYITY*YSTDLSSC 103
           NY     L   +C IT+ Y TD++SC
Sbjct: 172 NYFVTFPLELTTCAITFRYWTDINSC 197


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 553 LIENRVYEPRPSNFKVSMY 497
           L+EN++ EP P N   S Y
Sbjct: 552 LLENQIQEPEPENITSSQY 570


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 511 KVSMYSIFIYVQIFSKTIQYKVNRKCCQGHEQCNLACSF 395
           K   YS   Y  ++ + + ++  RKC    E C+L C +
Sbjct: 260 KYFSYSKNTYQDLYLEKVSHEPGRKCGFRIEDCHLRCLY 298


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 381 RTIKQKLHARLHCSCPWQHFL 443
           R IKQ+L + L C C  Q FL
Sbjct: 46  RAIKQQLKSNLKCVCHLQPFL 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,042
Number of Sequences: 5004
Number of extensions: 40058
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)