Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0133
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   4.5  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  

>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -3

Query: 421 MLLPVQLVLCVWGLQ*IWQXXISEWSHPLFWLQLKSLFHFFSSFCLVFW 275
           +LL   ++  + G+  I    I+   + L +L L  +F F    C ++W
Sbjct: 264 VLLHRNIIAALGGINRILSQHINVKDYVLAYLPLAHIFEFIFEMCCLYW 312


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 358 ISEWSHPLFWLQLKSLFHFFSSFCLVFWYNFSWFRTG 248
           I  W HPL+ + +  LF   + +         W RTG
Sbjct: 107 IWSWKHPLYRISILGLFDVKAPYVPWVMVLLRWLRTG 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,814
Number of Sequences: 5004
Number of extensions: 41737
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)