Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0133
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     30   1.5  
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    28   6.1  
04_03_0499 - 16581343-16581469,16581563-16581676,16581896-165819...    28   8.1  

>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 145 DADTGVASVTFSASGFTFLSSVLVSTAEVVF 53
           DAD GVA+V  +  G  F S V ++ AE VF
Sbjct: 53  DADDGVAAVVLAGRGRAFCSGVDLTAAEEVF 83


>01_06_1201 -
           35380338-35380496,35381200-35381322,35381521-35382066,
           35382285-35382392,35382695-35383225,35383614-35383743,
           35384225-35385081,35385303-35385408,35387119-35387230,
           35389255-35389347,35389723-35389771,35389859-35389897,
           35390671-35390757,35391613-35391873,35391957-35392166,
           35392413-35393507
          Length = 1501

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 482 NPIAKRPRVSMIPPTKL-GPSNALACTVGSMCVGASVDLARXDFGVVASSFLASVEELVS 306
           NP A R  + ++PP  L  P+ A A + G +CV A+   +R DF ++  S  A+   L S
Sbjct: 787 NPGACR-FIPLLPPKPLLSPAAAAASSRGGLCVAAA---SRRDFLLLVPSIAAASTVLQS 842

Query: 305 L 303
           L
Sbjct: 843 L 843


>04_03_0499 -
           16581343-16581469,16581563-16581676,16581896-16581931,
           16582964-16583013,16583633-16583705,16583883-16584078,
           16584154-16584445
          Length = 295

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 491 NPMNPIAKRPRVSMIPPTKLGPSNALACTVGSMCVGASVDLAR 363
           NP NP++ + +    PP      +A A   G + + A +  AR
Sbjct: 29  NPTNPVSTKAKKKKPPPPSKADQSASAAAAGGVLLSAEMPPAR 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,506,640
Number of Sequences: 37544
Number of extensions: 244515
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)