Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0133
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    29   2.4  
U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 489 SHESYSQETKGQYDSTNKAWSIKCSCLYSWFY 394
           S  S++ ET GQYD+  +     C C++   Y
Sbjct: 218 SESSFAGETNGQYDNNQEPHPSNCECVFHHDY 249


>U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical
           protein F35C8.7a protein.
          Length = 771

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 358 ISEWSHPLFWLQLKSLFHFFSSFCLV 281
           I + S  +FWLQ+ +LF FF   C V
Sbjct: 499 IEKESETIFWLQVYNLFAFFWLSCFV 524


>U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical
           protein F35C8.7b protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 358 ISEWSHPLFWLQLKSLFHFFSSFCLV 281
           I + S  +FWLQ+ +LF FF   C V
Sbjct: 458 IEKESETIFWLQVYNLFAFFWLSCFV 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,639
Number of Sequences: 27780
Number of extensions: 237580
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)