Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0132
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    48   1e-06
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    32   0.069
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    28   1.1  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    27   3.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.0  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +2

Query: 5   TSTIHCWATIAKTEGTSSFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 145
           +S+  C   I   EG  SFFKGA +N+LRG  GA VL +YD+++ ++
Sbjct: 271 SSSFECGRQILAKEGARSFFKGAGANILRGVAGAGVLSIYDQVQLLM 317


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 29  TIAKTEGTSSFFKGAFSNVLR-GTGGAFVLVLYDEI 133
           T+A+ EG ++ +KG    VLR G GG  +LV+++ +
Sbjct: 249 TVAREEGFTALYKGFVPKVLRLGPGGGILLVVFNSV 284


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 32  IAKTEGTSSFFKGAFSNVLRGTG-GAFVLVLYDEIKKV 142
           IAK EG  +FF G  + +LR      F L+ Y+++++V
Sbjct: 165 IAKQEGMKTFFYGYRATILRDIPFSGFQLLFYEKLRQV 202


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 32  IAKTEGTSSFFKGAFSNVLR 91
           I KTEG + FF+G  SN+L+
Sbjct: 276 IYKTEGINGFFRGYSSNMLK 295


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 120  KTSTKAPPVPLRTLEKAPL 64
            K S+KAPPVPL + +  P+
Sbjct: 1016 KLSSKAPPVPLPSADAPPI 1034


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,639
Number of Sequences: 5004
Number of extensions: 49279
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)