Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0132
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019... 63 2e-10
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309 41 8e-04
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 40 0.001
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 36 0.031
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627 33 0.17
11_08_0097 + 28330565-28330645,28330768-28330986,28331066-283311... 32 0.51
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717 31 0.67
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 30 2.0
01_07_0386 + 43218686-43218745,43218972-43219190,43219307-432193... 29 4.7
>05_06_0233 +
26599068-26599466,26601214-26601829,26601871-26601917,
26602101-26602268
Length = 409
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +2
Query: 5 TSTIHCWATIAKTEGTSSFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 145
+ST+ CW I K EG SF++GA SN+ R TG A +LVLYDE+KK +
Sbjct: 290 SSTLDCWRKIYKVEGIKSFYRGALSNMFRSTGAAAILVLYDEVKKFM 336
>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
Length = 382
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 8 STIHCWATIAKTEGTSSFFKGAFSNVLRGTGGAFVLVLYDEIK 136
S++ ++ I K EG S FKGA +N+LR GA VL YD+++
Sbjct: 327 SSMDAFSQILKNEGAKSLFKGAGANILRAIAGAGVLSGYDQLQ 369
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 8 STIHCWATIAKTEGTSSFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 145
S++ + I EG S FKGA +N+LR GA VL YD+++ V+
Sbjct: 325 SSLDAFKQIVAKEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVVV 370
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 35.9 bits (79), Expect = 0.031
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 8 STIHCWATIAKTEGTSSFFKGAFSNVLRGTGGAFVLVLYDEIKK 139
+ H I TEG + F+G +N+L G GA VL YD++ +
Sbjct: 268 NAFHAAKQIVSTEGFFTLFRGVGANILSGMAGAGVLAGYDQLHR 311
>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
Length = 419
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 2 GTSTIHCWATIAKTEGTSSFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 145
G S + +I KTEG + F+G F NV+R A L +D KK L
Sbjct: 170 GDSMTEVFQSIMKTEGWTGLFRGNFVNVIRVAPSKAIELFAFDTAKKFL 218
>11_08_0097 +
28330565-28330645,28330768-28330986,28331066-28331144,
28331222-28331355,28331447-28331545,28331638-28331742,
28332377-28332451,28333671-28333757,28333854-28333889
Length = 304
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 TSTIHCWATIAKTEGTSSFFKGAFSNVLR-GTGGAFVLVLYDEIKKV 142
TSTI C+ K +G +F+KG N R G+ + + ++++K+
Sbjct: 251 TSTIDCFVKTLKNDGPLAFYKGFLPNFARLGSWNVIMFLTLEQVQKL 297
>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
Length = 415
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 2 GTSTIHCWATIAKTEGTSSFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 145
G ST + +I K EG + F+G F NV+R A L +D K L
Sbjct: 168 GNSTAEVFQSIMKHEGWTGLFRGNFVNVIRVAPSKAIELFAFDTANKFL 216
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 17 HCWATIAKTEGTSSFFKGAFSNVLR-GTGGAFVLVLYDEIKKV 142
HC + TEG +S +KG F+ R G A V+ ++++++
Sbjct: 817 HCGYQVVVTEGVTSLYKGGFATFARLGPQTAITFVVCEKLREL 859
>01_07_0386 +
43218686-43218745,43218972-43219190,43219307-43219391,
43219583-43219713,43219802-43219900,43219984-43220088,
43220190-43220264,43222006-43222092,43222129-43222173
Length = 301
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 8 STIHCWATIAKTEGTSSFFKGAFSNVLR 91
ST+ C+A K +G +F+KG +N R
Sbjct: 246 STLDCFAKTLKNDGLPAFYKGFIANFCR 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,088
Number of Sequences: 37544
Number of extensions: 280209
Number of successful extensions: 430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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