Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0132
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +2

Query: 11  TIHCWATIAKTEGTSSFFKGAFSNVLRGTGGAFVLVLYDEIKKV 142
           +I C   I K EG  S  KGA +N+LRG  GA VL  +D+ K++
Sbjct: 252 SIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGFDKFKEL 295


>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 8   STIHCWATIAKTEGTSSFFKGAFSNVLR 91
           ST+H +++I K EG    +KG + N+L+
Sbjct: 202 STLHAFSSIVKLEGFRGLYKGMWPNILK 229


>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 174 ISM*FRVAATPLRSCIIRHENDFSNLF*LNKVLYNDSIIYCFIKC 308
           ISM  RV+AT L + +  H+N +  +  L +  +   ++YC   C
Sbjct: 669 ISMAHRVSATNLENVVGLHKNGYGRI--LAECTFTSKLLYCLWTC 711


>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 32  IAKTEGTSSFFKGAFSNVLRGT-GGAFVLVLYDEIKKVL 145
           IA+TEG  S FKG   N+L  T   A     Y ++K+ L
Sbjct: 796 IARTEGARSLFKGLCPNLLAVTPSRAIYFTTYQKLKEWL 834


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,690,550
Number of Sequences: 59808
Number of extensions: 333784
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)