Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0132
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    85   6e-19
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    85   6e-19
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 85.0 bits (201), Expect = 6e-19
 Identities = 37/46 (80%), Positives = 42/46 (91%)
 Frame = +2

Query: 8   STIHCWATIAKTEGTSSFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 145
           ST+HCWATI KTEG ++FFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 255 STLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 26.2 bits (55), Expect = 0.30
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 14  IHCWATIAKTEGTSSFFKGAFSNVLR 91
           I C+  I K +G  S+++G  +NV+R
Sbjct: 57  IDCFVRIPKEQGFLSYWRGNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 85.0 bits (201), Expect = 6e-19
 Identities = 37/46 (80%), Positives = 42/46 (91%)
 Frame = +2

Query: 8   STIHCWATIAKTEGTSSFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 145
           ST+HCWATI KTEG ++FFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 255 STLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 26.2 bits (55), Expect = 0.30
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 14  IHCWATIAKTEGTSSFFKGAFSNVLR 91
           I C+  I K +G  S+++G  +NV+R
Sbjct: 57  IDCFVRIPKEQGFLSYWRGNLANVIR 82


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 135 LISSYKTSTKAPPVPLRTLEKAPL 64
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 243 SNLF*LNKVLYNDSIIYCFIKCYIIAC 323
           SNLF +N  + N  +++C     +I C
Sbjct: 87  SNLFVINLAISNFLMMFCMSPPMVINC 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,090
Number of Sequences: 438
Number of extensions: 3407
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)